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    13 repositories

    • GenomicContactDynamics

      Public
      Code for the analyses and simulations involved in the Genomic Contact Dynamics research.
      R
      •1•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • iMotif_dev

      Public
      Data and scripts for iMotif stability predictions in a restricted C/T space of possible sequences.
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 13, 2024Sep 13, 2024

    • kmeRtone

      Public
      Multi-purpose and transferrable k-meric enrichment/depletion analysis software.
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Sep 7, 2024Sep 7, 2024

    • DNAkmerQM

      Public
      A database of electronic, topological, and QM-derived features calculated for DNA k-mers.
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Jun 27, 2024Jun 27, 2024

    • GenomeAssembler_dev

      Public
      Code to simulate the generation of sequencing reads, to de novo assemble a genome, and to calculate breakage propensity scores.
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 28, 2024Apr 28, 2024

    • NucleicAcidsQM

      Public
      Research and development code for QM calculations on nucleic acids.
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 24, 2024Mar 24, 2024

    • DNAFragility_dev

      Public
      Research and development code for DNA breakpoints induced under various conditions.
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 6, 2024Mar 6, 2024

    • DNAFragility_ML

      Public
      Development and application of DNA fragility prediction engine based only on sequence-context.
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 5, 2024Mar 5, 2024

    • DNAfrAIlib

      Public
      DNA fragility associated k-meric features for genomic sequence-driven machine learning.
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Feb 21, 2024Feb 21, 2024

    • GenomicPR2Simulations

      Public
      Pipeline for ODE-driven simulations to explore the genomic compliance of PR-2.
      Mathematica
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 9, 2023Jun 9, 2023

    • ROptimus

      Public
      ROptimus: a parallel general purpose adaptive optimisation engine
      rparalleloptimisation
      R
      •
      GNU General Public License v3.0
      •0•4•0•0•Updated Feb 2, 2023Feb 2, 2023

    • GenomicPR2SimsWebApp

      Public
      Shiny interface and simple ODE-based simulation code for the genomic base composition.
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 23, 2022Dec 23, 2022

    • G4Damage

      Public
      Pipeline for cross mapping DNA damage with regard to G-quadruplex structures.
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022