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    93 repositories

    • MOSAIC-docs

      Public
      Documentation for the Metapopulation Outbreak Simulation with Agent-based Implementation for Cholera (MOSAIC).
      R
      •0•0•0•0•Updated Mar 29, 2025Mar 29, 2025

    • laser-cholera

      Public
      "LASIK" - LASER based SImulation of Kolera
      Python
      •
      MIT License
      •0•1•4•0•Updated Mar 29, 2025Mar 29, 2025

    • laser-polio

      Public
      PHASER - Polio Huge Agent based Simulation for ERadication (using LASER)
      Python
      •
      MIT License
      •1•1•7•1•Updated Mar 29, 2025Mar 29, 2025

    • idmtools

      Public
      Python
      •
      Other
      •4•4•52•6•Updated Mar 28, 2025Mar 28, 2025

    • laser

      Public
      Light Agent Spatial modeling for ERadication
      Python
      •
      MIT License
      •6•4•41•1•Updated Mar 28, 2025Mar 28, 2025

    • RasterToolkit

      Public
      Python scripts for working with shapefiles and rasterized population data
      Python
      •
      MIT License
      •1•0•10•0•Updated Mar 28, 2025Mar 28, 2025

    • MOSAIC-pkg

      Public
      The R package for the Metapopulation Outbreak Simulation with Agent-based Implementation for Cholera (MOSAIC).
      R
      •0•0•7•0•Updated Mar 27, 2025Mar 27, 2025

    • hpvsim

      Public
      Human papillomavirus simulator (HPVsim)
      Python
      •
      MIT License
      •2•7•0•0•Updated Mar 25, 2025Mar 25, 2025

    • pathways-segmentation-public

      Public
      R
      •0•1•3•0•Updated Mar 24, 2025Mar 24, 2025

    • laser-generic

      Public
      Generic, SI/SIR/SEIR/etc., disease models based on LASER core.
      Jupyter Notebook
      •
      MIT License
      •0•2•12•0•Updated Mar 14, 2025Mar 14, 2025

    • laser-measles

      Public
      Measles model implementations based on LASER toolkit.
      Python
      •
      MIT License
      •1•1•8•0•Updated Mar 12, 2025Mar 12, 2025

    • Bridging-the-Gap-Low-Resource-African-Languages

      Public
      Code and data corresponding to paper Bridging the Gap: Enhancing LLM Performance for Low-Resource African Languages with New Benchmarks, Fine-Tuning, and Cultural Adjustments
      Jupyter Notebook
      •
      Other
      •1•4•0•2•Updated Mar 6, 2025Mar 6, 2025

    • data_access_library

      Public
      Data access library Demo Code and Contribution Guide
      HTML
      •
      MIT License
      •1•1•1•0•Updated Mar 5, 2025Mar 5, 2025

    • clusteringForVarietyIdentification

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 4, 2025Mar 4, 2025

    • GWSpatialGenetics

      Public
      The Institute of Disease Modeling interdisciplinary collaboration with Elizabeth Thiele (Vassar) and James Cotton (Wellcome Sanger Institute) to maximize the value of epidemiological and genetics data to understand Guinea worm transmission in Chad.
      HTML
      •3•3•2•0•Updated Feb 22, 2025Feb 22, 2025

    • IDM-CMS

      Public
      IDM compartmental modeling software (CMS)
      simulationidmmsestochasticcms
      C#
      •
      Other
      •10•7•9•3•Updated Feb 19, 2025Feb 19, 2025

    • DHS-Indicators-R

      Public
      R code to produce Demographic and Health Survey Indicators
      R
      •83•0•2•1•Updated Jan 28, 2025Jan 28, 2025

    • SAEDashboard

      Public
      JavaScript
      •
      MIT License
      •0•1•0•8•Updated Jan 14, 2025Jan 14, 2025

    • PACE-HRH-UI

      Public
      PACE-HRH-UI is a health capacity estimation tool built using R and Shinyapps
      R
      •
      MIT License
      •5•3•2•0•Updated Jan 13, 2025Jan 13, 2025

    • Deep-Learning-GIS-Regression

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •1•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • PACE-HRH

      Public
      PACE-HRH (Population-Aware Capacity Estimator for Human Resources for Health)
      R
      •
      MIT License
      •6•3•21•2•Updated Dec 17, 2024Dec 17, 2024

    • malaria-transmission_zero

      Public
      0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • emodpy-snt

      Public
      SNT Workflow for EMODPY
      R
      •
      MIT License
      •5•1•6•3•Updated Nov 27, 2024Nov 27, 2024

    • AIAugmentedSurveyResponseCategorization

      Public
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Nov 14, 2024Nov 14, 2024

    • SmallAreaEstimationForSurveyIndicators

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • vis-tools

      Public
      Visualization Toolkit
      JavaScript
      •
      Other
      •11•17•2•3•Updated Oct 28, 2024Oct 28, 2024

    • malaria-model_validation

      Public
      Python
      •3•2•16•0•Updated Oct 16, 2024Oct 16, 2024

    • MOSAIC-data

      Public
      A repository containing raw and processed data for the Metapopulation Outbreak Simulation with Agent-based Implementation for Cholera (MOSAIC).
      0•0•0•0•Updated Sep 24, 2024Sep 24, 2024

    • winogrande-mmlu-clinical-za

      Public
      Expanding Reasoning Benchmarks in Low-Resourced African Languages: Winogrande and Clinical MMLU in Afrikaans, Xhosa, and Zulu
      Jupyter Notebook
      •
      MIT License
      •0•1•0•3•Updated Aug 20, 2024Aug 20, 2024

    • deepfacility

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Jul 31, 2024Jul 31, 2024