Repositories list

• .github

  Public
  0•0•0•0•Updated Jan 24, 2025Jan 24, 2025

• FLOPA

  Public
  A python based tool for FLIM data opening, processing and analysis. Planned as Napari plugin/widget.

  GNU General Public License v3.0

  •0•0•2•0•Updated Jan 13, 2025Jan 13, 2025

• Tavakoli2022

  Public
  The project measures axonal growth speed and direction during development. Conducted at IMCF Biocev in collaboration with Mitra Tavakoli, Institute of Biotechnology of the Czech Academy of Sciences.

  neurosciencelive-cell-imagingaxons

  Jupyter Notebook

  •0•0•0•0•Updated Nov 2, 2024Nov 2, 2024

• scripts_and_macros

  Public
  Useful scripts and macros in various programming languages

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•1•0•Updated Jul 12, 2024Jul 12, 2024

• Virus-Infection-Analysis-Workflow

  Public
  This project aims to analyze the early infection (LT signal) and late expression (VP1) after infection with HBdMEC BK virus. The goal is to quantify the amount of signal inside the nucleus in the green and red channels over time.

  virusmicroscopybioimage-analysis

  Jupyter Notebook

  •0•0•0•0•Updated May 30, 2023May 30, 2023

• NNBA-2023

  Public
  The lectures' and practicals' materials for the Neural Networks in Bioimage Analysis course at IMCF Biocev, 2023

  machine-learningdeep-learningneural-networks+ 1lecture

  Jupyter Notebook

  •0•0•1•0•Updated May 7, 2023May 7, 2023

• Brustikova2022

  Public
  The project aims to measure the differences of viral particles distribution in the cell nucleus

  Jupyter Notebook

  •0•0•0•0•Updated Jan 25, 2023Jan 25, 2023

• Simonik2022

  Public
  The project aims to measure and analyse the change of angle between cell and sperm cell during their interaction.

  Jupyter Notebook

  •0•0•0•0•Updated Jun 30, 2022Jun 30, 2022