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@EddyRivasLab The Eddy/Rivas Laboratory

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    14 repositories

    • hmmer

      Public
      HMMER: biological sequence analysis using profile HMMs
      C
      •
      Other
      •69•310•11•2•Updated Oct 1, 2024Oct 1, 2024

    • R-scape

      Public
      RNA Structural Covariation Above Phylogenetic Expectation
      C
      •
      Other
      •2•7•1•0•Updated Sep 29, 2024Sep 29, 2024

    • labbib

      Public
      Lab's BibTex bibliography, and tools
      TeX
      •0•1•0•0•Updated Aug 30, 2024Aug 30, 2024

    • eddyrivaslab.github.io

      Public
      HTML
      •0•0•0•0•Updated Aug 26, 2024Aug 26, 2024

    • eddyrivaslab.github.io-src

      Public
      CSS
      •0•0•0•0•Updated Aug 26, 2024Aug 26, 2024

    • easel

      Public
      Sequence analysis library used by Eddy/Rivas lab code
      C
      •
      Other
      •26•46•3•1•Updated Aug 1, 2024Aug 1, 2024

    • infernal

      Public
      RNA secondary structure/sequence profiles for homology search and alignment
      C
      •
      Other
      •24•100•0•0•Updated Apr 12, 2024Apr 12, 2024

    • R-scape-web

      Public
      RNA Structure-driven Covariation Above Phylogenetic Expectation (web application)
      JavaScript
      •1•3•0•0•Updated Feb 6, 2024Feb 6, 2024

    • infernal.org

      Public
      Infernal's web page
      HTML
      •0•0•0•0•Updated Sep 11, 2023Sep 11, 2023

    • hmmer.org

      Public
      HMMER home page
      HTML
      •0•0•0•0•Updated Aug 15, 2023Aug 15, 2023

    • tornado

      Public
      A general purpose parser to produce grammars of single-sequence RNA secondary structure
      C
      •
      Other
      •1•1•0•0•Updated Apr 29, 2023Apr 29, 2023

    • null-model

      Public
      Repository to hold work on a new null model for HMMER and Infernal
      C
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Feb 5, 2021Feb 5, 2021

    • ssu-align

      Public
      Structural alignment of SSU rRNA sequences
      PostScript
      •0•4•3•0•Updated May 5, 2020May 5, 2020

    • PKNOTS

      Public
      A dynamic programming algorithm for RNA pseudoknot prediction
      C
      •
      Other
      •0•0•0•0•Updated Jan 30, 2020Jan 30, 2020