Repositories list

• epiwraps

  Public
  Wrappers for dealing and plotting with epigenomics data

  R

  •

  GNU General Public License v3.0

  •1•2•0•0•Updated Dec 20, 2024Dec 20, 2024

• diffUTR

  Public
  The diffUTR R package streamlines differential exon usage (DEU) analyses, and leverages existing DEU tools and alternative poly-adenylation site databases to enable differential 3' UTR usage analysis.

  R

  •1•6•1•1•Updated Oct 30, 2024Oct 30, 2024

• DTFAB

  Public
  Benchmark of methods for Differential TF activity from ATAC-seq data

  R

  •0•1•0•0•Updated Oct 14, 2024Oct 14, 2024

• BehaviorFlow

  Public
  Code package that allows meta analyses of unsupervised behavior results

  R

  •

  GNU General Public License v3.0

  •1•14•1•0•Updated Aug 27, 2024Aug 27, 2024

• enrichMiR

  Public
  miRNA target enrichment analysis

  R

  •1•4•1•0•Updated Jul 17, 2024Jul 17, 2024

• scanMiR

  Public
  A set of tools for scanning for miRNA binding sites and working with affinity models

  scanningmirnatdmd

  R

  •

  GNU General Public License v3.0

  •2•6•0•0•Updated Jul 16, 2024Jul 16, 2024

• ethEpigen2024_materials

  Public
  Materials for the 2024 ETH course "Bioinformatic approaches to regulatory genomics and epigenomics"

  HTML

  •

  GNU General Public License v3.0

  •19•0•0•0•Updated May 31, 2024May 31, 2024

• scanMiRApp

  Public
  Shiny app (and further functionalities) for scanMiR

  R

  •0•0•3•0•Updated Mar 13, 2024Mar 13, 2024

• Privitera-et.-al.-2023

  Public
  Effects of different NA modulations on the acute stress response

  R

  •0•1•0•0•Updated Mar 1, 2024Mar 1, 2024

• ethEpigen2023_materials

  Public
  Materials for the 2023 ETH course "Bioinformatic approaches to regulatory genomics and epigenomics"

  HTML

  •

  GNU General Public License v3.0

  •26•2•0•0•Updated Feb 11, 2024Feb 11, 2024

• Fischer-Kretschmer-et-al.-2023

  Public
  Code, objects and rendered rmarkdowns for

  HTML

  •0•0•0•0•Updated Nov 22, 2023Nov 22, 2023

• MG_A549

  Public
  R

  •0•0•0•0•Updated Nov 1, 2023Nov 1, 2023

• Glucorticoid-protacs

  Public
  R

  •0•0•0•0•Updated Nov 1, 2023Nov 1, 2023

• atac_frag_simulation

  Public
  HTML

  •0•0•0•0•Updated Aug 16, 2023Aug 16, 2023

• DTFAIB

  Public
  R

  •0•0•0•0•Updated Aug 16, 2023Aug 16, 2023

• scanMiRData

  Public
  miRNA affinity models for the scanMiR package

  R

  •0•0•1•0•Updated Jul 3, 2023Jul 3, 2023

• DLCAnalyzer

  Public
  R Scripts to analyze deep lab cut point data and related data

  R

  •

  GNU General Public License v3.0

  •16•63•19•1•Updated Jan 25, 2023Jan 25, 2023

• enrichMiR_paper

  Public
  scripts accompanying the enrichMiR paper

  R

  •0•0•0•0•Updated Apr 25, 2022Apr 25, 2022

• scanMiR_paper

  Public
  Python

  •1•0•0•0•Updated Feb 12, 2022Feb 12, 2022

• StressomeExplorer

  Public
  R

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Feb 10, 2022Feb 10, 2022

• stressTRAPreanalysis

  Public
  R

  •0•1•0•0•Updated Oct 10, 2021Oct 10, 2021

• Sperm-RNA-Dex

  Public
  HTML

  •0•0•0•0•Updated Dec 3, 2020Dec 3, 2020

• enrichMiR_benchmark

  Public
  HTML

  •0•0•0•0•Updated Nov 18, 2020Nov 18, 2020

• pupillometry

  Public
  A shiny app for pupillometry data analysis

  R

  •

  GNU General Public License v3.0

  •0•2•1•0•Updated Nov 18, 2020Nov 18, 2020

• circRNAs

  Public
  HTML

  •0•0•4•0•Updated Nov 1, 2019Nov 1, 2019