Repositories list

• efo

  Public
  Github repo for the Experimental Factor Ontology (EFO)

  Makefile

  •13•57•196•12•Updated Apr 7, 2025Apr 7, 2025

• gwas-gene-based

  Public
  GWAS Catalog gene-based tools

  Python

  •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

• oxo2

  Public
  A SSSOM compliant implementation of OxO that is backwards compatible with OxO version 1

  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

• ols4

  Public
  Version 4 of the EMBL-EBI Ontology Lookup Service (OLS)

  bioinformaticslinked-datardf+ 7semantic-webowlknowledge-graphontologiesknowledge-managementknowledge-representationfair-data

  Java

  •

  Apache License 2.0

  •24•61•103•10•Updated Apr 7, 2025Apr 7, 2025

• gwas-rest-api

  Public
  Refactoring Code for Rest API

  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

• GrEBI

  Public
  HPC knowledge graph aggregation pipeline

  Jupyter Notebook

  •

  Apache License 2.0

  •0•2•2•0•Updated Apr 7, 2025Apr 7, 2025

• efo-measurement-to-phenotype

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Apr 6, 2025Apr 6, 2025

• gwas-data-services

  Public
  Java

  •

  Apache License 2.0

  •0•0•3•0•Updated Apr 5, 2025Apr 5, 2025

• gwas-ui

  Public
  JavaScript

  •

  Apache License 2.0

  •4•5•23•4•Updated Apr 4, 2025Apr 4, 2025

• gwas-data-commons

  Public
  This repo will be having common components used across multiple services

  Java

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Apr 3, 2025Apr 3, 2025

• gwas-deposition-ui

  Public
  Deposition application for submitting GWAS data.

  JavaScript

  •1•2•8•8•Updated Apr 3, 2025Apr 3, 2025

• gwasdepo-deposition-service

  Public
  Java

  •1•0•7•3•Updated Apr 3, 2025Apr 3, 2025

• hancestro

  Public
  obofoundry

  Makefile

  •

  Creative Commons Attribution 4.0 International

  •2•6•11•0•Updated Apr 1, 2025Apr 1, 2025

• ontoSPOT-annotation

  Public
  A set of tools that annotate free text to ontologies using LLMs.

  Python

  •0•2•1•0•Updated Mar 31, 2025Mar 31, 2025

• eqtl-rest-api

  Public
  eQTL Catalogue REST API

  0•1•4•0•Updated Mar 27, 2025Mar 27, 2025

• gwas-sumstats-tools

  Public
  gwas-sumstats-tools

  Python

  •

  Apache License 2.0

  •1•11•3•1•Updated Mar 27, 2025Mar 27, 2025

• gwas-sumstats-service

  Public
  Summary statistics service

  Python

  •0•3•21•11•Updated Mar 26, 2025Mar 26, 2025

• otar_profiler

  Public
  Pipeline for creating Open Targets profile and slim files from EFO.

  Ruby

  •0•4•0•0•Updated Mar 26, 2025Mar 26, 2025

• monarch_pheval

  Public
  Jinja

  •

  MIT License

  •1•0•0•0•Updated Mar 25, 2025Mar 25, 2025

• gwas-template-services

  Public
  Application to provide template related services for the deposition interface

  Python

  •1•5•5•11•Updated Mar 25, 2025Mar 25, 2025

• gwas-utils

  Public
  Collection of tools and scripts to manage GWAS Catalog related infrastructure.

  quality-controltoolboxdata-release

  Python

  •3•6•4•6•Updated Mar 25, 2025Mar 25, 2025

• goci

  Public
  GWAS Catalog Ontology and Curation Infrastructure

  Java

  •

  Apache License 2.0

  •19•26•268•9•Updated Mar 21, 2025Mar 21, 2025

• gwas-fix-existing-obsolete-traits

  Public
  Java

  •0•0•0•0•Updated Mar 21, 2025Mar 21, 2025

• curategpt

  Public
  LLM-driven curation assist tool

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •13•0•0•0•Updated Mar 12, 2025Mar 12, 2025

• gwas-assoc-tools

  Public
  Python

  •

  Apache License 2.0

  •0•0•5•0•Updated Mar 7, 2025Mar 7, 2025

• eqtl-sumstats-service

  Public
  eQTL Summary Statistics Service

  Python

  •0•0•13•0•Updated Mar 7, 2025Mar 7, 2025

• gwas-sumstats-harmoniser-documentation

  Public
  gwas-sumstats-harmoniser-documentation

  JavaScript

  •0•1•0•0•Updated Feb 26, 2025Feb 26, 2025

• goci-rest

  Public
  Java

  •

  Apache License 2.0

  •1•4•31•2•Updated Feb 13, 2025Feb 13, 2025

• gwas-curation-service

  Public
  Java

  •0•0•10•2•Updated Jan 21, 2025Jan 21, 2025

• gwas-curation-ui

  Public
  The New Curation Front End interface for the GWAS Catalog

  TypeScript

  •0•0•4•0•Updated Jan 21, 2025Jan 21, 2025