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    11 repositories

    • NEFL_Haplotype_Editing

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 9, 2025Jan 9, 2025

    • CapraLab.github.io

      Public
      Capra Lab website
      HTML
      •
      MIT License
      •138•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • pdbmap

      Public
      Perl
      •1•2•20•0•Updated Oct 22, 2024Oct 22, 2024

    • lab-manuscript-template

      Public
      An academic manuscript template with writing tips in both LaTeX and MS Word format generated by the Capra Lab (2/2022)
      TeX
      •
      MIT License
      •1•20•0•0•Updated Nov 13, 2023Nov 13, 2023

    • pipeline_download_scripts

      Public
      BASH scripts to download required files for the psbadmin and pdbmap code
      Shell
      •0•0•1•0•Updated Mar 6, 2023Mar 6, 2023

    • resources

      Public
      This directory includes useful tutorials and resources for working in the Capra lab.
      Jupyter Notebook
      •0•1•0•0•Updated Jan 5, 2023Jan 5, 2023

    • cosmis

      Public
      COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently maps the landscape of 3D mutational constraint on 6.1 amino acid sites covering >80% (16,533) of human proteins.
      Python
      •
      GNU General Public License v3.0
      •5•17•0•0•Updated Nov 11, 2022Nov 11, 2022

    • PSB

      Public
      Personalized Structural Biology approach for rare coding variant interpretation, based on protein structural context and MD simulations.
      Shell
      •1•0•0•0•Updated Jun 23, 2022Jun 23, 2022

    • cosmis_app

      Public
      Dash based web application for interactive use of the COSMIS framework
      Python
      •0•0•0•0•Updated Sep 28, 2021Sep 28, 2021

    • DiGePred

      Public
      Random Forest classifier designed to predict pairs of human genes capable to causing a digenic disease when carrying rare variants simultaneously. DiGePred has been trained using digenic pairs from DIDA and non-digenic pairs from unaffected relatives of individuals with rare undiagnosed disease.
      Python
      •2•7•0•0•Updated Aug 19, 2021Aug 19, 2021

    • VIPUR

      Public
      A method for identifying deleterious protein variation.
      C++
      •5•0•0•0•Updated Feb 23, 2016Feb 23, 2016