CDPHE GSP Bioinformatics Unit

All

10 repositories

CDPHE-influenza
Public
Workflows and scripts for the assembly and analysis of influenza whole genome amplicon sequencing.
bioinformatics pipeline wdl influenza
WDL
•
GNU General Public License v3.0
•1•2•3•1•Updated Jan 26, 2025Jan 26, 2025
CDPHE-SARS-CoV-2
Public
Workflows and scripts for the assembly and analysis of SARS-CoV-2 whole genome tiled amplicon sequencing.
bioinformatics pipeline wdl sars-cov-2
WDL
•
GNU General Public License v3.0
•0•5•14•0•Updated Jan 15, 2025Jan 15, 2025
ncbi-cluster-tracker
Public
Python
•
GNU General Public License v3.0
•0•0•0•0•Updated Jan 13, 2025Jan 13, 2025
.github
Public
Repository for our GitHub Organization.
0•0•0•0•Updated Jan 8, 2025Jan 8, 2025
CDPHE-docker-builds
Public
Docker builds for CDPHE pipelines and workflows.
docker bioinformatics tools
Python
•
GNU General Public License v3.0
•0•0•1•0•Updated Nov 15, 2024Nov 15, 2024
CDPHE-analysis-tools
Public
Useful workflows and tasks for CDPHE pipelines.
bioinformatics tools wdl
WDL
•
Other
•0•0•0•0•Updated Nov 14, 2024Nov 14, 2024
CDPHE-H5-influenza
Public
Workflows and scripts for the assembly and analysis of H5 influenza
bioinformatics pipeline wdl influenza
Jupyter Notebook
•
GNU General Public License v3.0
•0•0•0•0•Updated Oct 15, 2024Oct 15, 2024
CDPHE-RSV
Public
Workflows and scripts for the assembly and analysis of RSV whole genome tiled amplicon sequencing.
bioinformatics pipeline wdl rsv
WDL
•
GNU General Public License v3.0
•0•1•1•0•Updated Sep 23, 2024Sep 23, 2024
CDPHE-Enterovirus
Public
Workflows and scripts for the assembly and analysis of enterovirus whole genome sequencing.
bioinformatics pipeline wdl enterovirus
WDL
•
GNU General Public License v3.0
•0•0•0•0•Updated Jun 19, 2024Jun 19, 2024
CDPHE-publications
Public
Repository of code used in CDPHE publications.
bioinformatics publications
Python
•
GNU General Public License v3.0
•0•0•0•0•Updated Jun 9, 2023Jun 9, 2023