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    12 repositories

    • bioCRNpyler

      Public
      A modular compiler for biological chemical reaction networks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •24•39•27•3•Updated Aug 27, 2024Aug 27, 2024

    • liposome-kit

      Public
      Build-A-Cell protocol for making liposomes
      Jupyter Notebook
      •13•11•8•1•Updated Jan 30, 2024Jan 30, 2024

    • BACRFC5_DNA_database

      Public
      Files supporting the development of BACRFC5: a proposal for a DNA parts database for BAC
      MIT License
      •0•1•0•0•Updated Nov 14, 2023Nov 14, 2023

    • pure-prediction

      Public
      A web app to predict protein expression in PURE cell-free transcription translation.
      Python
      •
      MIT License
      •0•1•0•0•Updated Dec 10, 2022Dec 10, 2022

    • engineering

      Public
      Engineering website
      Jupyter Notebook
      •3•9•3•5•Updated Oct 5, 2022Oct 5, 2022

    • txtlsim

      Public
      Cell-free expression modeling toolbox for MATLAB
      MATLAB
      •8•0•30•2•Updated May 24, 2022May 24, 2022

    • VivariumPURE

      Public
      Using Vivarium to build a modular model of PURE
      Jupyter Notebook
      •0•0•0•0•Updated Mar 8, 2022Mar 8, 2022

    • subsbml

      Public
      Python package for managing systems and subsystems of SBML models
      sbml
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •5•5•12•0•Updated Oct 19, 2020Oct 19, 2020

    • buildacell.github.io

      Public
      CSS
      •
      Apache License 2.0
      •2•5•0•1•Updated Jun 22, 2020Jun 22, 2020

    • interlab-modeling

      Public
      Modeling of biological circuits developed in the interlab integration study of Build-A-Cell
      sbmlinterlabbiological-circuits
      Jupyter Notebook
      •2•2•0•0•Updated Jan 31, 2020Jan 31, 2020

    • txtlsim-python

      Public
      Cell-free simulation toolbox in Python
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•4•19•0•Updated Sep 19, 2018Sep 19, 2018

    • peeps

      Public
      Place for everything related to people, workshops, & paperwork
      0•0•0•0•Updated Jan 9, 2018Jan 9, 2018