deploy_to_shinyapps.yml

name: Deploy interactive vignette to visr.shinyapps.io/tte-tutorial/

on:
  push:
    branches: [ main ]
    
  workflow_dispatch:

jobs:
  build:
    runs-on: ubuntu-latest

    steps:      
    - name: Checkout repo
      uses: actions/checkout@v4

    - name: Setup R
      uses: r-lib/actions/setup-r@v2
      with:
        # Fails when R=4.1.3
        # https://community.rstudio.com/t/error-unhandled-exception-child-task-1049745496-failed-error-building-image-r-version-4-1-2-currently-unavailable/121461/4
        r-version: '4.1.2' 
    
    - name: Query R dependencies
      run: |
        install.packages('remotes')
        saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
        writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
      shell: Rscript {0}

    - name: Cache R packages
      uses: actions/cache@v4
      with:
        path: ${{ env.R_LIBS_USER }}
        key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
        restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-

    - name: Install system dependencies
      run: |
        while read -r cmd
        do
          eval sudo $cmd
        done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
      
    - name: Deploy to shinyapps.io
      run: |
        remotes::install_deps(dependencies = TRUE)
        remotes::install_cran("learnr")
        remotes::install_cran("MatrixModels")
        remotes::install_cran("ModelMetrics")
        remotes::install_cran("RcppArmadillo")
        remotes::install_cran("RcppEigen")
        remotes::install_cran("SparseM")
        remotes::install_cran("abind")
        remotes::install_cran("car")
        remotes::install_cran("carData")
        remotes::install_cran("caret")
        remotes::install_cran("shiny")
        remotes::install_cran("corrplot")
        remotes::install_cran("ggpubr")
        remotes::install_cran("ggrepel")
        remotes::install_cran("ggsci")
        remotes::install_cran("ggsignif")
        remotes::install_cran("polynom")
        remotes::install_cran("rstatix")
        remotes::install_cran("visR")
        remotes::install_cran("rsconnect")
        library('rsconnect');
        setAccountInfo(name='visr', token=${{secrets.SHINYAPPS_TOKEN}}, secret=${{secrets.SHINYAPPS_SECRET}})
        deployApp(appName = 'tte-tutorial', appDir = 'vignettes/interactive_tte_tutorial')
      shell: Rscript {0}