From 4aadfd940164c2c95787841bd80c82e898b65729 Mon Sep 17 00:00:00 2001
From: Dong Xi <38050865+xidongdxi@users.noreply.github.com>
Date: Thu, 11 Jul 2024 16:10:02 -0400
Subject: [PATCH] updated test_values.R

---
 R/graph_create.R    | 4 +++-
 R/test_values.R     | 7 ++++++-
 codemeta.json       | 2 +-
 man/graph_create.Rd | 4 +++-
 man/test_values.Rd  | 6 ++++--
 5 files changed, 17 insertions(+), 6 deletions(-)

diff --git a/R/graph_create.R b/R/graph_create.R
index 33e2b00..5d9c4a8 100644
--- a/R/graph_create.R
+++ b/R/graph_create.R
@@ -101,7 +101,9 @@
 #'   H3 = c(0, 1, 0, 0),
 #'   H4 = c(1, 0, 0, 0)
 #' )
-#' \dontrun{g <- graph_create(hypotheses, transitions)}
+#' \dontrun{
+#' g <- graph_create(hypotheses, transitions)
+#' }
 #'
 #' # When names are not specified, hypotheses are numbered sequentially as
 #' # H1, H2, ...
diff --git a/R/test_values.R b/R/test_values.R
index 7997809..1921d28 100644
--- a/R/test_values.R
+++ b/R/test_values.R
@@ -1,4 +1,9 @@
-#' Tests for an intersection hypothesis
+#' Organize outputs for testing an intersection hypothesis
+#'
+#' @description
+#' An intersection hypothesis can be tested by a mixture of test types including
+#'   Bonferroni, parametric and Simes tests. This function organize outputs of
+#'   testing and prepare them for `graph_report`.
 #'
 #' @inheritParams graph_test_closure
 #' @inheritParams graph_create
diff --git a/codemeta.json b/codemeta.json
index e7b25b9..7c47dcc 100644
--- a/codemeta.json
+++ b/codemeta.json
@@ -312,7 +312,7 @@
     },
     "SystemRequirements": null
   },
-  "fileSize": "727.413KB",
+  "fileSize": "718.983KB",
   "citation": [
     {
       "@type": "SoftwareSourceCode",
diff --git a/man/graph_create.Rd b/man/graph_create.Rd
index 2bd9983..7b339a1 100644
--- a/man/graph_create.Rd
+++ b/man/graph_create.Rd
@@ -101,7 +101,9 @@ transitions <- rbind(
   H3 = c(0, 1, 0, 0),
   H4 = c(1, 0, 0, 0)
 )
-\dontrun{g <- graph_create(hypotheses, transitions)}
+\dontrun{
+g <- graph_create(hypotheses, transitions)
+}
 
 # When names are not specified, hypotheses are numbered sequentially as
 # H1, H2, ...
diff --git a/man/test_values.Rd b/man/test_values.Rd
index 89c9d71..8ca025f 100644
--- a/man/test_values.Rd
+++ b/man/test_values.Rd
@@ -4,7 +4,7 @@
 \alias{test_values_bonferroni}
 \alias{test_values_parametric}
 \alias{test_values_simes}
-\title{Tests for an intersection hypothesis}
+\title{Organize outputs for testing an intersection hypothesis}
 \usage{
 test_values_bonferroni(p, hypotheses, alpha, intersection = NA)
 
@@ -63,7 +63,9 @@ the hypothesis weight times \eqn{\alpha}.
 }
 }
 \description{
-Tests for an intersection hypothesis
+An intersection hypothesis can be tested by a mixture of test types including
+Bonferroni, parametric and Simes tests. This function organize outputs of
+testing and prepare them for \code{graph_report}.
 }
 \references{
 Bretz, F., Maurer, W., Brannath, W., and Posch, M. (2009). A graphical