_pkgdown.yml

url: https://openpharma.github.io/graphicalMCP/

template:
  bootstrap: 5

reference:
- title: Creating an initial graph
- desc: Functions for creating a graphical multiple comparison procedure
- contents:
  - graph_create
  - print.initial_graph
  - plot.initial_graph
  - as_initial_graph
  - as_graphMCP
  - as_igraph
- title: Updating a graph
- desc: Functions for updating a graphical multiple comparison procedure after deleting hypotheses
- contents:
  - graph_update
  - print.updated_graph
  - plot.updated_graph
- title: Calculating hypothesis weights in a closure
- desc: Function for generating the weighting strategy
- contents:
  - graph_generate_weights
- title: Testing a graphical multiple comparison procedure
- desc: Functions for performing a graphical multiple comparison procedure
- contents:
  - graph_test_closure
  - graph_test_shortcut
  - print.graph_report
  - graph_rejection_orderings
  - adjust_p_bonferroni
  - adjust_p_parametric
  - adjust_p_simes
  - adjust_weights_parametric
  - adjust_weights_simes
- title: Power simulation
- desc: Functions for performing power simulations
- contents:
  - graph_calculate_power
  - print.power_report
- title: Example graphs
- desc: Functions for creating example graphical multiple comparison procedures
- contents:
  - bonferroni
  - bonferroni_holm
  - fallback
  - fallback_improved_1
  - fallback_improved_2
  - fixed_sequence
  - huque_etal
  - random_graph
  - simple_successive_1
  - simple_successive_2
  - two_doses_two_primary_two_secondary
  - three_doses_two_primary_two_secondary

navbar:
  structure:
    left:  [intro, glossary, reference, articles, tutorials, news]
  components:
    glossary:
      text: Glossary
      href: articles/glossary.html
    reference:
      text: Function reference
      href: reference/index.html

articles:
- title: Vignettes
  navbar: ~
  contents:
  - shortcut-testing
  - closed-testing
  - graph-examples
  - comparisons
  - generate-closure

- title: Glossary
  contents:
  - glossary