Add logging level argument

open2c · Mar 22, 2019 · f041ce4 · f041ce4
1 parent e633036
commit f041ce4
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Showing 2 changed files with 9 additions and 1 deletion.
diff --git a/coolpup.py b/coolpup.py
@@ -583,7 +583,15 @@ def pileupsByWindowWithControl(mids, filename, pad=100, nproc=1, chroms=None,
                         help="""Name of the output file. If not set, is
                         generated automatically to include important
                         information.""")
+    parser.add_argument("-l", "--log", dest="logLevel",
+                        choices=['DEBUG', 'INFO', 'WARNING',
+                                 'ERROR', 'CRITICAL'],
+                        default='INFO',
+                        help="Set the logging level.")
     args = parser.parse_args()
+
+    logging.basicConfig(level=getattr(logging, args.logLevel))
+
     logging.info(args)
     if args.n_proc==0:
         nproc=-1

diff --git a/setup.py b/setup.py
@@ -7,7 +7,7 @@
 
 setup(
       name='coolpuppy',
-      version='0.8',
+      version='0.8.1',
       scripts=['coolpup.py'],
       install_requires=['numpy', 'cooler', 'pandas', 'natsort', 'scipy',
                         'cooltools'],