fix: np.array copy behavior change in numpy 2.1

open2c · Dec 19, 2024 · 915578d · 915578d
1 parent d45a1b6
commit 915578d
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/src/cooler/create/_ingest.py b/src/cooler/create/_ingest.py
@@ -112,8 +112,8 @@ def _sanitize_records(
         return chunk
 
     # Find positional anchor columns, convert to zero-based if needed
-    anchor1 = np.array(chunk[anchor_field + suffixes[0]])
-    anchor2 = np.array(chunk[anchor_field + suffixes[1]])
+    anchor1 = chunk[anchor_field + suffixes[0]].to_numpy(copy=True)
+    anchor2 = chunk[anchor_field + suffixes[1]].to_numpy(copy=True)
     if is_one_based:
         anchor1 -= 1
         anchor2 -= 1