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@open2c

Open Chromosome Collective

README.md

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  1. cooler cooler Public

    A cool place to store your Hi-C

    Python 209 51

  2. cooltools cooltools Public

    The tools for your .cool's

    Jupyter Notebook 143 51

  3. pairtools pairtools Public

    Extract 3D contacts (.pairs) from sequencing alignments

    Python 105 32

  4. bioframe bioframe Public

    Genomic interval operations on Pandas DataFrames

    Python 176 30

  5. distiller-nf distiller-nf Public

    A modular Hi-C mapping pipeline

    Groovy 87 25

  6. polychrom polychrom Public

    Chromosome polymer simulations and in silico capture experiments

    Python 47 16

Repositories

Showing 10 of 28 repositories
  • bioframe Public

    Genomic interval operations on Pandas DataFrames

    open2c/bioframe’s past year of commit activity
    Python 176 MIT 30 28 2 Updated Dec 23, 2024
  • cooler Public

    A cool place to store your Hi-C

    open2c/cooler’s past year of commit activity
    Python 209 BSD-3-Clause 51 31 (1 issue needs help) 2 Updated Dec 23, 2024
  • distiller-sm Public

    a Snakemake version of distiller - the Open2C Hi-C mapping workflow

    open2c/distiller-sm’s past year of commit activity
    Python 4 MIT 3 8 0 Updated Dec 19, 2024
  • pairtools Public

    Extract 3D contacts (.pairs) from sequencing alignments

    open2c/pairtools’s past year of commit activity
    Python 105 MIT 32 40 (2 issues need help) 5 Updated Dec 18, 2024
  • polychrom-hoomd Public
    open2c/polychrom-hoomd’s past year of commit activity
    Python 7 MIT 4 0 0 Updated Dec 16, 2024
  • distiller-nf Public

    A modular Hi-C mapping pipeline

    open2c/distiller-nf’s past year of commit activity
    Groovy 87 MIT 25 63 (2 issues need help) 3 Updated Dec 5, 2024
  • .github Public
    open2c/.github’s past year of commit activity
    0 MIT 0 0 0 Updated Nov 7, 2024
  • coolpuppy Public

    A versatile tool to perform pile-up analysis on Hi-C data in .cool format.

    open2c/coolpuppy’s past year of commit activity
    Python 78 MIT 12 8 0 Updated Oct 31, 2024
  • cooltools Public

    The tools for your .cool's

    open2c/cooltools’s past year of commit activity
    Jupyter Notebook 143 MIT 51 62 8 Updated Oct 21, 2024
  • open2c.github.io Public

    Welcome to the Open Chromosome Collective!

    open2c/open2c.github.io’s past year of commit activity
    Ruby 2 2 0 0 Updated Sep 26, 2024
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