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Miscellaneous

Miscellaneous scripts/functions.

  • Backup: Backup files from scratch.
  • convertToPlink: Convert genotype file (Cambridge format) to plink format. Example R script to convert to plink and subset on SNPs and/or samples.
  • reference: List of bioinformatics tools.
  • ReactomeToPSEQ: Convert Ractome pathway files each row to separate gene set files.
  • convert: Fix plink's bim file when some SNPs are duplicated, but have different alleles. (will be added to oncofunco package).
  • RMakrdownReferenceExample: RMakrdown reference example script.

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