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CHANGELOG.md

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0.10.2 (November 2024)

  • Drop support for Python 3.8.
  • Document parameters and return value of parse_url.
  • Write metadata using delayed that depends on writing array(s)
  • Document return values of sample data
  • Simplify Python tutorial
  • pin zarr at < 3
  • Update version of pyupgrade

0.9.0 (May 2024)

  • Correctly specify maximum compatible fsspec version. (#338)
  • Add tests on Python 3.12. (#338)
  • Write OMERO metadata. (#261)
  • Fixed chunking when a scalar value for chunks is given. Previously passing storage_options={"chunks": <int>} only set the chunk size of the final dimension. Now the chunk size of all dimensions is set to this value, which is identical behaviour to zarr-python. (#365)

0.8.3 (November 2023)

  • Fix reading HCS file on AWS S3 (#322)
  • Update docs to include write example for HCS dataset (#317)
  • Minor improvements to format docs (#316)
  • Add dask to intersphinx mapping (#315)

0.8.2 (September 2023)

0.8.0 (June 2023)

  • Add ome_zarr view image.zarr to server and view in browser (#285)
  • Allow main with empty args: thanks to Dominik Kutra (#279)

0.7.0 (May 2023)

  • Optimize zarr multiscale writing by permitting delayed execution: thanks to Camilo Laiton (#257)
  • Use default compressor by default; thanks to Juan Nunez-Iglesias (#253)
  • Fix bug in dask resizing of edge chunks (#244)
  • Fix dimension separator used in dask array to_zarr; thanks to Luca Marconato (#243)
  • Add compute option to image writing methods; thanks to Camilo Laiton (#257)
  • Allow errors to be raised when reading Multiscales data (#266)
  • Add a pre-commit configuration for codespell; thanks to Yaroslav Halchenko (#272)

0.6.1 (October 2022)

  • Fix pyramid dtype for scaler.local_mean (#233)

0.6.0 (September 2022)

0.5.2 (July 2022)

  • Disable auto_mkdir when path begins with s3, thanks to @colobas (#212)

0.5.1 (June 2022)

  • Read multi-resolution pyramids in ome_zarr.reader.Well, thanks to @tcompa (#209)

0.5.0 (June 2022)

  • Add fmt option to write_label_metadata and store version (#206)

0.4.2 (May 2022)

  • Relax version detection (#189)
  • Fix format warning duplication (#190)
  • Fix plate pyramid loading (#195)

0.4.1 (Mar 2022)

  • Unify docstrings in ome_zarr.writer module (#185)

0.4.0 (Mar 2022)

  • Add API for writing data according to the image-label spec: write_labels, write_multiscale_labels & write_label_metadata (#178, #184)
  • Remove byte_order from write_image signature (#184)
  • Deprecate chunks argument in favor of storage_options (#184)

0.3.0 (Feb 2022)

Specification changes

API additions

  • Add support for passing storage options (compression, chunks..) to the writer API, thanks to @satra (#161)
  • Add API for writing plate & well metadata (#153, #157)
  • Add API for writing multiscales metadata (#149, #165)

Bug fix

  • Fix remaining HCS assumptions that images are 5D (#148)
  • Cap aiohttp to version 3.x (#127)

0.2.0 (Oct 2021)

Breaking changes

  • Add support for writing and scaling 2D, 3D and 4D data (#114)

Infrastructure changes

  • Add dispatch GitHub workflow (#118)

0.1.1 (Sep 2021)

Bug fix

  • Fix loading of HCS data with missing wells (#111)
  • Point to new Embassy object store (#109)

0.1.0 (Sep 2021)