added some packages

conda-dubii-3-stat-R.yml

@@ -1,7 +1,7 @@
 ## Conda environment for the course "Statistical Analysis with R" 
 ## of the "Diplome Universitaire en Bioinformatique integrative" (DU-Bii).
 ## https://du-bii.github.io/accueil/
-name: dubii19-m3-stat-r
+name: dubii_r_2019
 
 channels:
   - r
@@ -13,17 +13,19 @@ dependencies:
 
   ## RCRAN packages
   - r::r-base  >=3.5,< 3.6
-  - r::r-e1071 
-  - r::r-randomforest
-  - r::r-yaml        # Required to load the config file
-  - r::r-roxygen2    # To build the package doc
-  - r::r-kableextra    # To export nice-looking tables in the R markdown reports
-  - bioconda::r-mixomics # For the course of integrative bioinformatics
+  - r::r-knitr        # For R markdown
+  - r::r-kableextra   # To export nice-looking tables in the R markdown reports
+  - r::r-formattable  # nice formating of tables in reports
+  - r::r-roxygen2     # To build package documentation
+  - r::r-yaml         # Required to load Yaml config files
+  - r::r-e1071        # for SVM
+  - r::r-randomforest # Supervised classification
 
   ## Bioconductor packages
   - bioconda::bioconductor-deseq2
   - bioconda::bioconductor-edger 
   - bioconda::bioconductor-limma
+  - bioconda::r-mixomics # For the course of integrative bioinformatics
 
   ## Other packages
   - lcantini::r-mofa