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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

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  1. shesmu Public

    Decision-driven action launching system

    Java 8 4

  2. djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 9 6

  3. vidarr Public

    Analysis provenance tracking server

    Java 1 1

  4. data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python

Repositories

Showing 10 of 246 repositories
  • vidarr Public

    Analysis provenance tracking server

    Java 1 MIT 1 0 3 Updated Apr 22, 2025
  • varscan Public

    varscan repo contains code for Varscan workflow

    WDL 0 GPL-3.0 0 0 1 Updated Apr 22, 2025
  • metagenomicReport Public
    WDL 0 MIT 0 0 1 Updated Apr 22, 2025
  • purple Public
    WDL 1 0 0 0 Updated Apr 22, 2025
  • callability Public
    WDL 0 1 1 1 Updated Apr 22, 2025
  • pipeline-timings Public

    code for creating plots for review of pipeline/workflow run timings

    Python 0 0 0 0 Updated Apr 22, 2025
  • ClinicalReportGenerator Public

    a workflow for generation of Djerba Clinical Reports (generally), for RUO clinical reports (specifically)

    WDL 0 0 0 0 Updated Apr 21, 2025
  • crosscheck_fingerprint_caller Public

    To call sequencing library swaps and matches from CrosscheckFingerprints output given OICR metadata

    Python 0 0 0 0 Updated Apr 21, 2025
  • biomodalQC Public

    QC workflow for biomodal pipeline

    WDL 0 0 0 0 Updated Apr 17, 2025
  • vidarr-tools Public

    The home of Python tools for use with Víðarr

    WDL 0 1 0 0 Updated Apr 16, 2025
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