README.md

NOTE: when browsing the TSVs on GitHub, the right hand columns may appear truncated

Generated fuzzy matchings between ontologies

Use the following PURLs:

• http://purl.obolibrary.org/obo/upheno/mappings/hp-to-zp-bestmatches.tsv
• http://purl.obolibrary.org/obo/upheno/mappings/hp-to-mp-bestmatches.tsv
• http://purl.obolibrary.org/obo/upheno/mappings/hp-to-wbphenotype-bestmatches.tsv

Columns:

1. HP Class ID
2. HP Class Label
3. Other ontology class ID
4. Other ontology class Label
5. Fuzzy equivalence score
6. Fuzzy SubClass score

Both scores range over 0 to 1.

Currently the fuzzy equivalence score is the Jaccard similarity:

|Anc(C) /\ Anc(D)|
------------------
|Anc(C) \/ Anc(D)|

The fuzzy SubClass score is a measure of how much the HP class is a subclass of the external class:

|Anc(C) /\ Anc(D)|
------------------
     |Anc(D)|