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Refresh the local copy of PORO. #3118

Merged
merged 2 commits into from
Nov 17, 2023
Merged

Refresh the local copy of PORO. #3118

merged 2 commits into from
Nov 17, 2023

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gouttegd
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Our local copy of PORO (used when building composite-metazoan) contains bogus general class axioms that, through bridging axioms and because they involve high-level Uberon classes ('anatomical entity' and 'immaterial anatomical entity') ultimately affect a large number of classes in composite-metazoan.

We refresh our copy of PORO with the latest release in which the offending axioms have been fixed.

closes #1958

Our local copy of PORO (used when building composite-metazoan) contains
bogus general class axioms that, through bridging axioms and because
they involve high-level Uberon classes ('anatomical entity' and
'immaterial anatomical entity') ultimately affect a large number of
classes in composite-metazoan.

We refresh our copy of PORO with the latest release in which the
offending axioms have been fixed.

closes #1958
@gouttegd gouttegd requested a review from anitacaron as a code owner November 16, 2023 14:35
@gouttegd gouttegd self-assigned this Nov 16, 2023
@gouttegd
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Note: In the planned overhaul of the composite-* pipeline, I am hoping that we’ll be able to “unfreeze” all the local copies of the various ontologies in src/imports/local-*.

But in the meantime, refreshing just PORO allows at least to fix the #1958 issue without seemingly introducing any further problem.

@gouttegd gouttegd merged commit 17b7e37 into master Nov 17, 2023
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@gouttegd gouttegd deleted the refresh-poro branch November 17, 2023 16:36
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invalid owl expressions being brought in to composite-metazoa
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