Replace type definition for dubious synonyms

src/ontology/uberon-edit.obo

@@ -31,7 +31,6 @@ synonymtypedef: BRAIN_NAME_ABV "brain name abbreviations (drosophila)"
 synonymtypedef: COMPARATIVE_PREFERRED "preferred term in the context of comparative anatomy"
 synonymtypedef: DEPRECATED "A historic synonym, no longer encouraged"
 synonymtypedef: DEVELOPMENTAL "developmental term"
-synonymtypedef: DUBIOUS "dubious or contested synonym"
 synonymtypedef: HOMOLOGY "a synonym made on the basis of a possibly homologous structure in another species"
 synonymtypedef: HUMAN_PREFERRED "preferred term when talking about an instance of this class in Homo sapiens"
 synonymtypedef: INCONSISTENT "indicates that a synonym is used in an inconsistent or confusing way, typically between species"
@@ -40,6 +39,7 @@ synonymtypedef: MISSPELLING "a mis-spelling that is in common use and thus recor
 synonymtypedef: NON_AMNIOTE "synonym that is inappropriate for amniotes"
 synonymtypedef: NON_MAMMAL "synonym that is inappropriate for mammals"
 synonymtypedef: OMO:0003000 "abbreviation"
+synonymtypedef: OMO:0003002 "dubious or contested synonym"
 synonymtypedef: OMO:0003004 "plural form"
 synonymtypedef: PENDING_REVIEW "expert consultation and attribution required"
 synonymtypedef: SENSU "taxonomic disambiguation"
@@ -12451,8 +12451,8 @@ comment: EDITOR_NOTE TODO - add distinct classes for hemal vs neural?
 subset: vertebrate_core
 synonym: "cranial articular process of vertebra" EXACT []
 synonym: "neural prezygapophyses" RELATED OMO:0003004 [TAO:0001325]
-synonym: "neural prezygapophysis" NARROW DUBIOUS [ZFA:0001325]
-synonym: "neural prezygopophyses" NARROW DUBIOUS [ZFA:0001325]
+synonym: "neural prezygapophysis" NARROW OMO:0003002 [ZFA:0001325]
+synonym: "neural prezygopophyses" NARROW OMO:0003002 [ZFA:0001325]
 synonym: "prezygapophysis" EXACT []
 synonym: "processus articularis superior" EXACT []
 synonym: "processus articularis superior vertebrae" EXACT LATIN [FMA:11953, FMA:TA]
@@ -12480,7 +12480,7 @@ subset: vertebrate_core
 synonym: "caudal articular process of vertebra" EXACT []
 synonym: "inferior articular process of vertebra" EXACT HUMAN_PREFERRED [FMA:11954]
 synonym: "neural postzygapophyses" RELATED OMO:0003004 [TAO:0000681]
-synonym: "neural postzygapophysis" NARROW DUBIOUS [ZFA:0000681]
+synonym: "neural postzygapophysis" NARROW OMO:0003002 [ZFA:0000681]
 synonym: "neural postzygopophyses" RELATED [TAO:0000681]
 synonym: "neural postzygopophysis" EXACT [ZFA:0000681]
 synonym: "postzygapophysis" EXACT []
@@ -36177,7 +36177,7 @@ synonym: "nucleus tuberomamillaris hypothalami" RELATED LATIN [NeuroNames:427]
 synonym: "TM" BROAD OMO:0003000 [BIRNLEX:1271, NIFSTD:NeuroNames_abbrevSource]
 synonym: "TM" RELATED OMO:0003000 [BIRNLEX:1271]
 synonym: "tubero-mamillary area" RELATED [NeuroNames:427]
-synonym: "tuberomamillary nucleus" RELATED DUBIOUS [EV:0100237]
+synonym: "tuberomamillary nucleus" RELATED OMO:0003002 [EV:0100237]
 synonym: "tuberomammillary hypothalamic nucleus" EXACT [BIRNLEX:1271]
 synonym: "tuberomammillary nucleus" EXACT [BIRNLEX:1271]
 synonym: "tuberomammillary nucleus, ventral part" RELATED [NeuroNames:427]
@@ -57444,7 +57444,7 @@ name: cuneiform nucleus
 synonym: "area parabigeminalis (Mai)" RELATED LATIN [NeuroNames:502]
 synonym: "CnF" BROAD OMO:0003000 [BIRNLEX:1430, NIFSTD:NeuroNames_abbrevSource]
 synonym: "cuneiform nucleus (Castaldi)" RELATED [NeuroNames:502]
-synonym: "cunieform nucleus" EXACT DUBIOUS [FMA:231327]
+synonym: "cunieform nucleus" EXACT OMO:0003002 [FMA:231327]
 synonym: "nucleus cuneiformis" RELATED LATIN [NeuroNames:502]
 synonym: "parabigeminal area (mai)" EXACT []
 xref: BAMS:CnF
@@ -62639,7 +62639,7 @@ relationship: part_of UBERON:0001723 {gci_relation="part_of", gci_filler="NCBITa
 id: UBERON:0002928
 name: dentate gyrus polymorphic layer
 def: "A cellular layer of the dentate gyrus enclosed by the granule cell layer. A number of cell types are located in the polymorphic layer but the most prominent is the mossy cell." [http://orcid.org/0000-0002-6601-2165, PMCID:PMC2492885]
-synonym: "CA4" RELATED DUBIOUS [PMID:17765709]
+synonym: "CA4" RELATED OMO:0003002 [PMID:17765709]
 synonym: "polymorph layer of the dentate gyrus" RELATED [BAMS:PoDG]
 xref: BAMS:po
 xref: BAMS:PoDG
@@ -65244,7 +65244,7 @@ synonym: "griseum centrale mesencephali" RELATED LATIN [NeuroNames:510]
 synonym: "griseum periventriculare mesencephali" RELATED LATIN [NeuroNames:510]
 synonym: "midbrain periaqueductal grey" EXACT [MA:0000209]
 synonym: "pAG" RELATED [NeuroNames:510]
-synonym: "periaquectuctal grey" RELATED DUBIOUS [https://sourceforge.net/tracker/?func=detail&aid=3209233&group_id=76834&atid=1205376, MA:0002895]
+synonym: "periaquectuctal grey" RELATED OMO:0003002 [https://sourceforge.net/tracker/?func=detail&aid=3209233&group_id=76834&atid=1205376, MA:0002895]
 synonym: "periaqueductal gray" EXACT [FMA:74510]
 synonym: "periaqueductal gray matter" EXACT [FMA:74510]
 synonym: "periaqueductal gray of tegmentum" EXACT [FMA:74510]
@@ -86357,7 +86357,7 @@ synonym: "Bowman's layer" EXACT [FMA:58273]
 synonym: "Bowman's membrane" EXACT [FMA:58273]
 synonym: "lamina limitans anterior (cornea)" EXACT [FMA:58273]
 synonym: "lamina limitans anterior corneae" EXACT LATIN [FMA:58273, FMA:TA]
-synonym: "Reichert's membrane" RELATED DUBIOUS [http://sourceforge.net/tracker/?func=detail&aid=2956371&group_id=76834&atid=974957]
+synonym: "Reichert's membrane" RELATED OMO:0003002 [http://sourceforge.net/tracker/?func=detail&aid=2956371&group_id=76834&atid=974957]
 xref: FMA:58273
 xref: MA:0001240
 xref: NCIT:C32226
@@ -108802,7 +108802,7 @@ name: anterior transverse temporal area 41
 alt_id: UBERON:0013574
 def: "A subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. It occupies the anterior transverse temporal gyrus (H) in the bank of the lateral sulcus on the dorsal surface of the temporal lobe. Cytoarchitecturally it is bounded medially by the parainsular area 52 (H) and laterally by the posterior transverse temporal area 42 (H) (Brodmann-1909). Adapted from Brain Info." [BIRNLEX:1582]
 synonym: "anterior transverse temporal area 41" EXACT [FMA:68638]
-synonym: "anterior transverse termporal area 41" EXACT DUBIOUS [BIRNLEX:1582]
+synonym: "anterior transverse termporal area 41" EXACT OMO:0003002 [BIRNLEX:1582]
 synonym: "area 41 of Brodmann" EXACT [BIRNLEX:1582, FMA:68638]
 synonym: "area 41 of Brodmann-1909" EXACT [BIRNLEX:1774]
 synonym: "area temporalis transversa anterior" EXACT [BIRNLEX:1774]
@@ -108839,7 +108839,7 @@ synonym: "Brodmann area 42" EXACT [FMA:68639]
 synonym: "Brodmann area 42, posterior transverse temporal" EXACT [BIRNLEX:1775]
 synonym: "Brodmann's area 42" EXACT [BIRNLEX:1589]
 synonym: "posterior transverse temporal area 42" EXACT [FMA:68639]
-synonym: "posterior transverse termporal area 42" EXACT DUBIOUS [BIRNLEX:1589]
+synonym: "posterior transverse termporal area 42" EXACT OMO:0003002 [BIRNLEX:1589]
 xref: BIRNLEX:1589
 xref: BIRNLEX:1775
 xref: FMA:236867
@@ -109778,8 +109778,8 @@ relationship: part_of UBERON:0001757 ! pinna
 id: UBERON:0006204
 name: inguinal ligament
 def: "A band running from the pubic tubercle to the anterior superior iliac spine. Its anatomy is very important for operating on hernia patients. It forms the base of the inguinal canal through which an indirect inguinal hernia may develop. The inguinal ligament runs from the anterior superior iliac spine of the ilium to the pubic tubercle of the pubic bone. It is formed by the external abdominal oblique aponeurosis and is continuous with the fascia lata of the thigh." [Wikipedia:Inguinal_ligament]
-synonym: "fallopian ligament" EXACT DUBIOUS [FMA:19855, Wikipedia:Inguinal_ligament]
-synonym: "Poupart's ligament" EXACT DUBIOUS [FMA:19855, Wikipedia:Inguinal_ligament]
+synonym: "fallopian ligament" EXACT OMO:0003002 [FMA:19855, Wikipedia:Inguinal_ligament]
+synonym: "Poupart's ligament" EXACT OMO:0003002 [FMA:19855, Wikipedia:Inguinal_ligament]
 synonym: "Vesalius' ligament" EXACT [FMA:19855]
 xref: FMA:19855
 xref: SCTID:361900000
@@ -169627,7 +169627,7 @@ def: "The zone of the skin that surrounds a lip and is colored red due to thin e
 synonym: "vermilion border" BROAD []
 synonym: "vermilion border of lip" EXACT []
 synonym: "vermilion of lip" EXACT []
-synonym: "vermillion" RELATED DUBIOUS []
+synonym: "vermillion" RELATED OMO:0003002 []
 xref: FMA:59824
 xref: SCTID:362086008
 intersection_of: UBERON:0000014 ! zone of skin
@@ -176511,7 +176511,7 @@ synonym: "medial part" RELATED [BIRNLEX:2662]
 synonym: "medial subnucleus of solitary tract" EXACT HUMAN_PREFERRED [BIRNLEX:2662]
 synonym: "medial subnucleus of the solitary tract" EXACT [NeuroNames:745]
 synonym: "nucleus of the solitary tract" RELATED [BIRNLEX:2662]
-synonym: "solitary nucleus, left, meidal subnucleus" EXACT DUBIOUS [HBA:9661]
+synonym: "solitary nucleus, left, meidal subnucleus" EXACT OMO:0003002 [HBA:9661]
 synonym: "solitary nucleus, medial subnucleus" EXACT [HBA:9661, http://orcid.org/0000-0002-6601-2165]
 xref: BIRNLEX:2662
 xref: HBA:9661