Make base for GO import (#3097)

* `make_base` for GO import * refresh imports * add mirror_from `go-base.owl` Co-authored-by: Nico Matentzoglu <nicolas.matentzoglu@gmail.com> * update imports --------- Co-authored-by: Anita Caron <anitacaron@users.noreply.github.com> Co-authored-by: Nico Matentzoglu <nicolas.matentzoglu@gmail.com>
obophenotype · Oct 25, 2023 · 21e7141 · 21e7141
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commit 21e7141
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diff --git a/src/ontology/Makefile b/src/ontology/Makefile
@@ -427,8 +427,9 @@ mirror-cl: | $(TMPDIR)
 .PHONY: mirror-go
 .PRECIOUS: $(MIRRORDIR)/go.owl
 mirror-go: | $(TMPDIR)
-	if [ $(MIR) = true ] && [ $(IMP) = true ]; then curl -L $(OBOBASE)/go/go-base.owl --create-dirs -o $(MIRRORDIR)/go.owl --retry 4 --max-time 200 &&\
-		$(ROBOT) convert -i $(MIRRORDIR)/go.owl -o $@.tmp.owl && mv $@.tmp.owl $(TMPDIR)/$@.owl; fi
+	if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(ROBOT) convert -I http://purl.obolibrary.org/obo/go/go-base.owl -o $@.tmp.owl && \
+		$(ROBOT) remove -i $@.tmp.owl --base-iri http://purl.obolibrary.org/obo/GO_ --base-iri http://purl.obolibrary.org/obo/GOREL_ --base-iri http://purl.obolibrary.org/obo/GOCHE_ --axioms external --preserve-structure false --trim false -o $@.tmp.owl &&\
+		mv $@.tmp.owl $(TMPDIR)/$@.owl; fi
 
 
 ## ONTOLOGY: envo