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bdso-simple.owl
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bdso-simple.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/pcl/bdso-simple.owl#"
xml:base="http://purl.obolibrary.org/obo/pcl/bdso-simple.owl"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:skos="http://www.w3.org/2004/02/skos/core#"
xmlns:terms="http://purl.org/dc/terms/"
xmlns:custom="http://n2o.neo/custom/"
xmlns:schema="http://schema.org/"
xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:nsf2_full_mtg="http://www.jcvi.org/framework/nsf2_full_mtg#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/pcl/bdso-simple.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/pcl/releases/2025-01-06/bdso-simple.owl"/>
<dc:title>Brain Data Standards Cell Ontology</dc:title>
<terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
<owl:versionInfo>2025-01-06</owl:versionInfo>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://n2o.neo/custom/cell_set_additional_aliases -->
<owl:AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_additional_aliases"/>
<!-- http://n2o.neo/custom/cell_set_alias_assignee -->
<owl:AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_alias_assignee"/>
<!-- http://n2o.neo/custom/cell_set_alias_citation -->
<owl:AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_alias_citation"/>
<!-- http://n2o.neo/custom/cell_set_aligned_alias -->
<owl:AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_aligned_alias"/>
<!-- http://n2o.neo/custom/cell_set_label -->
<owl:AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_label"/>
<!-- http://n2o.neo/custom/cell_set_preferred_alias -->
<owl:AnnotationProperty rdf:about="http://n2o.neo/custom/cell_set_preferred_alias"/>
<!-- http://n2o.neo/custom/node_metadata -->
<owl:AnnotationProperty rdf:about="http://n2o.neo/custom/node_metadata"/>
<!-- http://n2o.neo/custom/original_label -->
<owl:AnnotationProperty rdf:about="http://n2o.neo/custom/original_label"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000028 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000028">
<rdfs:label>symbol</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000111 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000111"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000112 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000112"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000114 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000114"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115">
<rdfs:label>definition</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000116 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000116"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000117 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000117"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000118 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000118"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000119 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000232 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000232"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000424 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000424"/>
<!-- http://purl.obolibrary.org/obo/IAO_0100001 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0100001">
<rdfs:label>term replaced by</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/PCL_0000100 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/PCL_0000100">
<rdfs:label>synonym</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/PCL_0010051 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/PCL_0010051">
<rdfs:label>cell_type_rank</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/PCL_0010052 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/PCL_0010052">
<rdfs:label>cell_types_count</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/PCL_0010053 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/PCL_0010053">
<rdfs:label>cell_subclasses_count</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/PCL_0010054 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/PCL_0010054">
<rdfs:label>cell_classes_count</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/PCL_0010055 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/PCL_0010055">
<rdfs:label>has_age</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/PCL_0010056 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/PCL_0010056">
<rdfs:label>has_sex</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/PCL_0010057 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/PCL_0010057">
<rdfs:label>has_brain_region</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/PCL_0010058 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/PCL_0010058">
<rdfs:label>has nsforest marker</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/PCL_0010059 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/PCL_0010059">
<rdfs:label>cluster id</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/PCL_0010060 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/PCL_0010060">
<rdfs:label>cell_count</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/PCL_0010061 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/PCL_0010061">
<rdfs:label>nuclei_count</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/PCL_0010062 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/PCL_0010062">
<rdfs:label>fbeta_confidence_score</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0001900 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001900"/>
<!-- http://purl.obolibrary.org/obo/RO_0040042 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0040042"/>
<!-- http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/valid_for_go_annotation_extension">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/valid_for_go_gp2term -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/valid_for_go_gp2term">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/valid_for_go_ontology -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/valid_for_go_ontology">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/valid_for_gocam -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/valid_for_gocam">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/ro/subsets#ro-eco -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/ro/subsets#ro-eco">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/contributor -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/contributor"/>
<!-- http://purl.org/dc/elements/1.1/description -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/description"/>
<!-- http://purl.org/dc/elements/1.1/title -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/title"/>
<!-- http://purl.org/dc/terms/contributor -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/contributor"/>
<!-- http://purl.org/dc/terms/creator -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/creator"/>
<!-- http://purl.org/dc/terms/description -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/description"/>
<!-- http://purl.org/dc/terms/license -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/license"/>
<!-- http://purl.org/dc/terms/provenance -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/provenance"/>
<!-- http://purl.org/dc/terms/relation -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/relation"/>
<!-- http://purl.org/dc/terms/source -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/source"/>
<!-- http://purl.org/dc/terms/subject -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/subject"/>
<!-- http://purl.org/dc/terms/title -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/title"/>
<!-- http://schema.org/archivedAt -->
<owl:AnnotationProperty rdf:about="http://schema.org/archivedAt"/>
<!-- http://schema.org/assesses -->
<owl:AnnotationProperty rdf:about="http://schema.org/assesses"/>
<!-- http://schema.org/discussionUrl -->
<owl:AnnotationProperty rdf:about="http://schema.org/discussionUrl"/>
<!-- http://schema.org/headline -->
<owl:AnnotationProperty rdf:about="http://schema.org/headline"/>
<!-- http://schema.org/includedInDataCatalog -->
<owl:AnnotationProperty rdf:about="http://schema.org/includedInDataCatalog"/>
<!-- http://schema.org/position -->
<owl:AnnotationProperty rdf:about="http://schema.org/position"/>
<!-- http://www.geneontology.org/formats/oboInOwl#SubsetProperty -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
<!-- http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref">
<rdfs:label>database_cross_reference</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasExactSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym">
<rdfs:label>has_exact_synonym</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasOBONamespace -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasOBONamespace"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym">
<rdfs:label>has_related_synonym</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#id -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/>
<!-- http://www.geneontology.org/formats/oboInOwl#inSubset -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#inSubset"/>
<!-- http://www.geneontology.org/formats/oboInOwl#shorthand -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#shorthand"/>
<!-- http://www.jcvi.org/framework/nsf2_full_mtg#has_soma_location_in -->
<owl:AnnotationProperty rdf:about="http://www.jcvi.org/framework/nsf2_full_mtg#has_soma_location_in"/>
<!-- http://www.jcvi.org/framework/nsf2_full_mtg#id -->
<owl:AnnotationProperty rdf:about="http://www.jcvi.org/framework/nsf2_full_mtg#id"/>
<!-- http://www.jcvi.org/framework/nsf2_full_mtg#neuron_type -->
<owl:AnnotationProperty rdf:about="http://www.jcvi.org/framework/nsf2_full_mtg#neuron_type"/>
<!-- http://www.jcvi.org/framework/nsf2_full_mtg#part_of -->
<owl:AnnotationProperty rdf:about="http://www.jcvi.org/framework/nsf2_full_mtg#part_of"/>
<!-- http://www.jcvi.org/framework/nsf2_full_mtg#preferred_name -->
<owl:AnnotationProperty rdf:about="http://www.jcvi.org/framework/nsf2_full_mtg#preferred_name"/>
<!-- http://www.jcvi.org/framework/nsf2_full_mtg#prefixIRI -->
<owl:AnnotationProperty rdf:about="http://www.jcvi.org/framework/nsf2_full_mtg#prefixIRI"/>
<!-- http://www.jcvi.org/framework/nsf2_full_mtg#species_id -->
<owl:AnnotationProperty rdf:about="http://www.jcvi.org/framework/nsf2_full_mtg#species_id"/>
<!-- http://www.jcvi.org/framework/nsf2_full_mtg#species_source -->
<owl:AnnotationProperty rdf:about="http://www.jcvi.org/framework/nsf2_full_mtg#species_source"/>
<!-- http://www.jcvi.org/framework/nsf2_full_mtg#tdc_id -->
<owl:AnnotationProperty rdf:about="http://www.jcvi.org/framework/nsf2_full_mtg#tdc_id"/>
<!-- http://www.w3.org/2004/02/skos/core#definition -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2004/02/skos/core#definition"/>
<!-- http://www.w3.org/2004/02/skos/core#prefLabel -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2004/02/skos/core#prefLabel"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000050 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000050">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000111 xml:lang="en">is part of</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">my brain is part of my body (continuant parthood, two material entities)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this day is part of this year (occurrent parthood)</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a core relation that holds between a part and its whole</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)
A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">part_of</obo:IAO_0000118>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<obo:RO_0040042 rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<obo:RO_0040042 rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<obo:RO_0040042 rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<obo:RO_0040042 rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
<obo:RO_0040042 rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:RO_0040042 rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
<obo:RO_0040042 rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
<oboInOwl:hasDbXref>BFO:0000050</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>external</oboInOwl:hasOBONamespace>
<oboInOwl:id>part_of</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_annotation_extension"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_gp2term"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_ontology"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_gocam"/>
<oboInOwl:shorthand>part_of</oboInOwl:shorthand>
<rdfs:label xml:lang="en">part of</rdfs:label>
<rdfs:label>part of</rdfs:label>
<rdfs:seeAlso rdf:resource="http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections"/>
<rdfs:seeAlso rdf:resource="http://ontologydesignpatterns.org/wiki/Submissions:PartOf"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://wiki.geneontology.org/Part_of</rdfs:seeAlso>
<rdfs:seeAlso>http://www.obofoundry.org/ro/#OBO_REL:part_of</rdfs:seeAlso>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000051 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000051">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000111 xml:lang="en">has part</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">my body has part my brain (continuant parthood, two material entities)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this year has part this day (occurrent parthood)</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a core relation that holds between a whole and its part</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)
A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">has_part</obo:IAO_0000118>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<oboInOwl:hasDbXref>BFO:0000051</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>external</oboInOwl:hasOBONamespace>
<oboInOwl:id>has_part</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_annotation_extension"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_ontology"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_gocam"/>
<oboInOwl:shorthand>has_part</oboInOwl:shorthand>
<rdfs:label xml:lang="en">has part</rdfs:label>
<rdfs:label>has part</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000053 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000053">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#InverseFunctionalProperty"/>
<obo:IAO_0000111 xml:lang="en">bearer of</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">this apple is bearer of this red color</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this vase is bearer of this fragility</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">Inverse of characteristic_of</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">bearer_of</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">is bearer of</obo:IAO_0000118>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<oboInOwl:hasDbXref>RO:0000053</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>external</oboInOwl:hasOBONamespace>
<oboInOwl:id>bearer_of</oboInOwl:id>
<oboInOwl:shorthand>bearer_of</oboInOwl:shorthand>
<rdfs:label xml:lang="en">has characteristic</rdfs:label>
<rdfs:label>bearer of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002100 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002100">
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002100"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
</owl:propertyChainAxiom>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">Relation between a neuron and a material anatomical entity that its soma is part of.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0002-7073-9172"/>
<obo:IAO_0000424><http://purl.obolibrary.org/obo/BFO_0000051> some (
<http://purl.obolibrary.org/obo/GO_0043025> and <http://purl.obolibrary.org/obo/BFO_0000050> some ?Y)</obo:IAO_0000424>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<rdfs:label xml:lang="en">has soma location</rdfs:label>
<rdfs:label>has soma location</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002162 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002162">
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002162"/>
</owl:propertyChainAxiom>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000051"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002162"/>
</owl:propertyChainAxiom>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002215"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002162"/>
</owl:propertyChainAxiom>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115>x is in taxon y if an only if y is an organism, and the relationship between x and y is one of: part of (reflexive), developmentally preceded by, derives from, secreted by, expressed.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0001-9227-417X"/>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0002-6601-2165"/>
<obo:IAO_0000119 rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/17921072"/>
<obo:IAO_0000119 rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/20973947"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
<rdfs:comment>Connects a biological entity to its taxon of origin.</rdfs:comment>
<rdfs:label>in taxon</rdfs:label>
<rdfs:seeAlso rdf:resource="https://github.com/obophenotype/uberon/wiki/Taxon-constraints"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002215 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002215">
<obo:IAO_0000112>mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)</obo:IAO_0000112>
<obo:IAO_0000112>osteoclast SubClassOf 'capable of' some 'bone resorption'</obo:IAO_0000112>
<obo:IAO_0000115>A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. </obo:IAO_0000115>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0002-6601-2165"/>
<obo:IAO_0000118>has function realized in</obo:IAO_0000118>
<obo:IAO_0000119 rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/20123131"/>
<obo:IAO_0000119 rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/21208450"/>
<obo:IAO_0000232>For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)".</obo:IAO_0000232>
<oboInOwl:hasDbXref>RO:0002215</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>external</oboInOwl:hasOBONamespace>
<oboInOwl:id>capable_of</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
<oboInOwl:shorthand>capable_of</oboInOwl:shorthand>
<rdfs:label xml:lang="en">capable of</rdfs:label>
<rdfs:label>capable of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002292 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002292">
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115>y expresses x if and only if there is a gene expression process (GO:0010467) that occurs in y, and one of the following holds: (i) x is a gene, and x is transcribed into a transcript as part of the gene expression process (ii) x is a transcript, and x was transcribed from a gene as part of the gene expression process (iii) x is a mature gene product (protein or RNA), and x was translated or otherwise processed from a transcript that was transcribed as part of the gene expression process.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0002-6601-2165"/>
<rdfs:label xml:lang="en">expresses</rdfs:label>
<rdfs:label>expresses</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0015001 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0015001">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0015002"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0015001"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0015003"/>
</owl:propertyChainAxiom>
<obo:IAO_0000112>transcriptomically defined cell type X equivalent to ‘cell’ and (has_exemplar_data value [transcriptomic profile data])</obo:IAO_0000112>
<obo:IAO_0000115>A relation between a material entity and some data in which the data is taken as exemplifying the material entity.</obo:IAO_0000115>
<obo:IAO_0000116>C has_exemplar_data y iff x is an instance of C and y is data about x that is taken as exemplifying of C.</obo:IAO_0000116>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0002-5260-9315"/>
<obo:IAO_0000232>This relation is not meant to capture the relation between occurrents and data.</obo:IAO_0000232>
<rdfs:label>has exemplar data</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0015002 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0015002">
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0002-5260-9315"/>
<rdfs:label>exemplar data of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0015003 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0015003">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000115>A relation between a group and another group it is part of but does not fully constitute.</obo:IAO_0000115>
<obo:IAO_0000116>X subcluster_of Y iff: X and Y are clusters/groups; X != Y; all members of X are also members of Y.</obo:IAO_0000116>
<obo:IAO_0000117 rdf:resource="https://orcid.org/0000-0001-7258-9596"/>
<obo:IAO_0000232>This is used specifically for sets whose members are specified by some set-forming operator (method of grouping) such as clustering analyses in single cell transcriptomics.</obo:IAO_0000232>
<rdfs:label>subcluster of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0015004 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0015004">
<obo:IAO_0000112>'Lamp5-like Egln3_1 primary motor cortex GABAergic interneuron (Mus musculus)' subClass_of: has_characterizing_marker_set some 'NS forest marker set of Lamp5-like Egln3_1 MOp (Mouse).'; NS forest marker set of Lamp5-like Egln3_1 SubClass_of: ('has part' some 'Mouse Fbn2') and ('has part' some 'Mouse Chrna7') and ('has part' some 'Mouse Fam19a1').</obo:IAO_0000112>
<obo:IAO_0000112>transcriptomically defined cell type X subClass_of: (has_characterizing_marker_set some S1); S1 has_part some gene 1, S1 has_part some gene 2, S1 has_part some gene 3.</obo:IAO_0000112>
<obo:IAO_0000115>A relation that applies between a cell type and a set of markers that can be used to uniquely identify that cell type.</obo:IAO_0000115>
<obo:IAO_0000116>C has_characterizing_marker_set y iff: C is a cell type and y is a collection of genes or proteins whose expression is sufficient to distinguish cell type C from most or all other cell types.</obo:IAO_0000116>
<obo:IAO_0000232>This relation is not meant for cases where set of genes/proteins are only useful as markers in some specific context - e.g. in some specific location. In these cases it is recommended to make a more specific cell class restricted to the relevant context.</obo:IAO_0000232>
<terms:contributor rdf:resource="https://orcid.org/0000-0001-7258-9596"/>
<oboInOwl:hasExactSynonym>has marker gene combination</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>has marker signature set</oboInOwl:hasExactSynonym>
<rdfs:label>has characterizing marker set</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_HOM0000007 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_HOM0000007">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#SymmetricProperty"/>
<obo:IAO_0000115>Homology that is defined by common descent.</obo:IAO_0000115>
<terms:creator rdf:resource="http://bgee.unil.ch"/>
<terms:source rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/20116127"/>
<oboInOwl:hasBroadSynonym>homology</oboInOwl:hasBroadSynonym>
<oboInOwl:hasDbXref>ECO:0000080</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>RO_proposed_relation:homologous_to</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>SO:0000330</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>SO:0000853</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>SO:0000857</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>SO:homologous_to</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>TAO:homologous_to</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym>cladistic homology</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>historical homologous to</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>phylogenetic homology</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>taxic homology</oboInOwl:hasExactSynonym>
<oboInOwl:hasRelatedSynonym>true homology</oboInOwl:hasRelatedSynonym>
<rdfs:label>in historical homology relationship with</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/HOM_0000007"/>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/RO_HOM0000007"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>Homology that is defined by common descent.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:resource="http://dx.doi.org/10.1016/S0169-5347(97)01125-7"/>
<oboInOwl:hasDbXref rdf:resource="http://purl.obolibrary.org/obo/HOM_0000007"/>
<oboInOwl:hasDbXref>ISBN:0123195837</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/pr#has_gene_template -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/pr#has_gene_template"/>
</rdf:RDF>
<!-- Generated by the OWL API (version 4.5.29) https://github.com/owlcs/owlapi -->