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bspo-base.obo
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format-version: 1.2
data-version: bspo/releases/2023-05-27/bspo-base.owl
synonymtypedef: human "synonym typically used in the context of human anatomy" NARROW
synonymtypedef: vertebrate "synonym typically used in the context of vertebrate anatomy" NARROW
default-namespace: spatial
namespace-id-rule: * BSPO:$sequence(7,0,999999999)$
remark: based on FBql
ontology: bspo/bspo-base
property_value: http://purl.org/dc/elements/1.1/description "An ontology for respresenting spatial concepts, anatomical axes, gradients, regions, planes, sides and surfaces. These concepts can be used at multiple biological scales and in a diversity of taxa, including plants, animals and fungi. The BSPO is used to provide a source of anatomical location descriptors for logically defining anatomical entity classes in anatomy ontologies." xsd:string
property_value: http://purl.org/dc/elements/1.1/title "Biological Spatial Ontology" xsd:string
property_value: http://purl.org/dc/elements/1.1/type IAO:8000001
property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/3.0/
property_value: IAO:0000700 CARO:0000000
property_value: owl:versionInfo "2023-05-27" xsd:string
[Term]
id: BSPO:0000000
name: left side
def: "The side of an organism that is left of the sagittal plane." [BSPO:cjm]
synonym: "left" EXACT []
is_a: BSPO:0000054 ! anatomical side
relationship: left_of BSPO:0000007 ! right side
relationship: starts_axis BSPO:0000017 ! left-right axis
[Term]
id: BSPO:0000001
name: upper side
comment: Consider merging with superior side.
synonym: "upper" EXACT []
is_a: BSPO:0000054 ! anatomical side
relationship: starts_axis BSPO:0000011 ! upper-lower axis
[Term]
id: BSPO:0000002
name: lower side
comment: Consider merging with inferior side.
synonym: "lower" EXACT []
is_a: BSPO:0000054 ! anatomical side
relationship: finishes_axis BSPO:0000011 ! upper-lower axis
[Term]
id: BSPO:00000021
name: deep-superficial gradient (obsolete)
comment: was made obsolete because the ID had too many digits
is_obsolete: true
replaced_by: BSPO:0000021
[Term]
id: BSPO:0000003
name: deep side
synonym: "deep" EXACT []
is_a: BSPO:0000054 ! anatomical side
relationship: deep_to BSPO:0000004 ! superficial side
relationship: starts_axis BSPO:0000012 ! deep-superficial axis
[Term]
id: BSPO:0000004
name: superficial side
synonym: "superficial" EXACT []
is_a: BSPO:0000054 ! anatomical side
relationship: finishes_axis BSPO:0000012 ! deep-superficial axis
[Term]
id: BSPO:0000005
name: anatomical surface
def: "A 2D surface of an anatomical continuant." [BSPO:cjm]
comment: to be merged into CARO
synonym: "surface" EXACT []
xref: FMA:24137
is_a: CARO:0000010 ! anatomical boundary
[Term]
id: BSPO:0000006
name: anatomical margin
def: "Fiat anatomical region extending a short distance from the boundary of an object inwards." [BSPO:cjm]
synonym: "edge" EXACT []
synonym: "margin" EXACT []
is_a: BSPO:0000070 ! anatomical region
[Term]
id: BSPO:0000007
name: right side
def: "The side of an organism that is right of the sagittal plane." [BSPO:cjm, BSPO:wd]
synonym: "right" EXACT []
is_a: BSPO:0000054 ! anatomical side
relationship: finishes_axis BSPO:0000017 ! left-right axis
[Term]
id: BSPO:0000008
name: parasagittal plane
def: "Sagittal plane that divides a bilateral body into unequal left and right parts." [BSPO:mah]
synonym: "parasagittal section" EXACT []
is_a: BSPO:0000417 ! sagittal plane
[Term]
id: BSPO:0000009
name: midsagittal plane
def: "Sagittal plane that divides bilateral body into equal left and right parts." [BSPO:mah]
comment: only in bilaterally symmetrical organisms
synonym: "median plane" RELATED []
synonym: "median sagittal plane" EXACT [FMA:74563]
synonym: "midline plane" EXACT []
synonym: "midsagittal section" EXACT []
xref: FMA:74563
is_a: BSPO:0000417 ! sagittal plane
[Term]
id: BSPO:0000010
name: anatomical axis
def: "A straight line through space, intersecting an anatomical entity." [BSPO:cjm]
comment: Axis directions are defined in terms of axes.
xref: http://upload.wikimedia.org/wikipedia/commons/3/34/Anatomical_Directions_and_Axes.JPG
is_a: CARO:0000008 ! anatomical line
relationship: passes_through CARO:0000000 ! anatomical entity
[Term]
id: BSPO:0000011
name: upper-lower axis
def: "An anatomical axis determined by gravity." [BSPO:cjm]
synonym: "superior-inferior axis" RELATED []
is_a: BSPO:0000010 ! anatomical axis
[Term]
id: BSPO:0000012
name: deep-superficial axis
def: "An axis that extends from an internal position to a more external position in the body or body part." [BSPO:PM]
comment: Muscles are frequently categorized as 'deep', 'intermediate', and 'superficial'.
is_a: BSPO:0000010 ! anatomical axis
[Term]
id: BSPO:0000013
name: anterior-posterior axis
def: "An axis that extends through an organism from head end to opposite end of body or tail." [BSPO:cjm]
comment: In sponges, AP is used to indicate the direction of movement [in larval stage] (as it is in other metazoans that move, e.g., the basal bilaterians). [PM]
synonym: "A-P axis" EXACT []
synonym: "anteroposterior axis" EXACT []
synonym: "AP axis" EXACT []
synonym: "cephalocaudal axis" NARROW [http://en.wikipedia.org/wiki/Anatomical_terms_of_location]
synonym: "craniocaudal axis" NARROW vertebrate []
synonym: "longitudinal axis" RELATED []
synonym: "rostral/caudal" NARROW vertebrate []
synonym: "rostrocaudal axis" NARROW vertebrate []
is_a: BSPO:0000010 ! anatomical axis
intersection_of: BSPO:0000010 ! anatomical axis
intersection_of: orthogonal_to BSPO:0000018 ! transverse plane
relationship: approximately_perpendicular_to BSPO:0000016 ! dorsal-ventral axis
relationship: orthogonal_to BSPO:0000018 ! transverse plane
[Term]
id: BSPO:0000014
name: apical-basal axis relative to substrate
def: "An axis that extends through an organism or organism part from the part of the organism or organism part attached to a substrate (basal) to the furthest from the attachment (apical). Note that the apical-basal axis is often used for organismal parts where there is attachment via a basal lamina or other structure." [BSPO:mah]
synonym: "apical/basal" EXACT []
synonym: "longitudinal axis" RELATED []
is_a: BSPO:0000010 ! anatomical axis
[Term]
id: BSPO:0000015
name: proximal-distal axis
def: "An axis that extends from the point of attachment of a structure (proximal) to the point furthest away from the plane of attachment (distal)." [BSPO:curators, http://en.wikipedia.org/wiki/Anatomical_terms_of_location]
comment: In some communities, proximal and distal are used when specifying the position of parts of elements that are contained within the body, such as gill arches or vertebral spines. In these cases, use of the classes medial-lateral axis or medial-external axis are more appropriate.
synonym: "proximal/distal" EXACT []
synonym: "proximodistal" EXACT []
is_a: BSPO:0000010 ! anatomical axis
[Term]
id: BSPO:0000016
name: dorsal-ventral axis
def: "An axis that is approximately perpendicular to the anterior-posterior axis and that extends through the horizontal plane of the body." [BSPO:curators]
synonym: "anterior-posterior axis" NARROW human []
synonym: "D-V axis" EXACT []
synonym: "dorsoventral axis" EXACT []
synonym: "DV axis" EXACT []
is_a: BSPO:0000010 ! anatomical axis
intersection_of: BSPO:0000010 ! anatomical axis
intersection_of: orthogonal_to BSPO:0000019 ! horizontal plane
relationship: orthogonal_to BSPO:0000019 ! horizontal plane
[Term]
id: BSPO:0000017
name: left-right axis
def: "An axis that bisects an organism from left to right sides of body, through a sagittal plane." [BSPO:cjm]
synonym: "dextro-sinister axis" EXACT []
synonym: "L-R axis" EXACT []
synonym: "left to right axis" EXACT []
synonym: "LR axis" EXACT []
synonym: "R-L axis" EXACT []
synonym: "right to left axis" EXACT []
synonym: "right-left axis" EXACT []
synonym: "RL axis" EXACT []
is_a: BSPO:0000010 ! anatomical axis
intersection_of: BSPO:0000010 ! anatomical axis
intersection_of: orthogonal_to BSPO:0000417 ! sagittal plane
relationship: orthogonal_to BSPO:0000417 ! sagittal plane
[Term]
id: BSPO:0000018
name: transverse plane
def: "Anatomical plane that divides body into anterior and posterior parts." [BSPO:mah]
synonym: "axial plane" EXACT []
synonym: "axial section" EXACT []
synonym: "cross-section" RELATED []
synonym: "transverse section" EXACT []
xref: FMA:12247
is_a: BSPO:0000400 ! anatomical plane
[Term]
id: BSPO:0000019
name: horizontal plane
def: "Anatomical plane that divides bilateral body into dorsal and ventral parts." [BSPO:mah]
synonym: "coronal section" RELATED []
synonym: "frontal plane" EXACT []
synonym: "frontal section" RELATED []
synonym: "horizontal anatomical plane" EXACT [FMA:52810]
synonym: "horizontal section" EXACT []
xref: FMA:52810
is_a: BSPO:0000400 ! anatomical plane
[Term]
id: BSPO:0000020
name: upper-lower gradient
def: "Anatomical gradient that is distributed along the upper-lower axis." [BSPO:wd]
is_a: BSPO:0000051 ! anatomical gradient
intersection_of: BSPO:0000051 ! anatomical gradient
intersection_of: follows_axis BSPO:0000011 ! upper-lower axis
relationship: follows_axis BSPO:0000011 ! upper-lower axis
[Term]
id: BSPO:0000021
name: deep-superficial gradient
def: "Anatomical gradient that is distributed along the deep-superficial axis." [BSPO:wd]
is_a: BSPO:0000051 ! anatomical gradient
intersection_of: BSPO:0000051 ! anatomical gradient
intersection_of: follows_axis BSPO:0000012 ! deep-superficial axis
relationship: follows_axis BSPO:0000012 ! deep-superficial axis
[Term]
id: BSPO:0000022
name: superior side
def: "The side that is higher relative to the substrate." [BSPO:curators]
synonym: "cranial" RELATED []
synonym: "superior" EXACT []
is_a: BSPO:0000054 ! anatomical side
[Term]
id: BSPO:0000023
name: apical-basal gradient
def: "Anatomical gradient that is distributed along the apical-basal axis." [BSPO:wd]
is_a: BSPO:0000051 ! anatomical gradient
intersection_of: BSPO:0000051 ! anatomical gradient
intersection_of: follows_axis BSPO:0000014 ! apical-basal axis relative to substrate
relationship: follows_axis BSPO:0000014 ! apical-basal axis relative to substrate
[Term]
id: BSPO:0000024
name: proximal-distal gradient
def: "Anatomical gradient that is distributed along the proximal-distal axis." [BSPO:wd]
is_a: BSPO:0000051 ! anatomical gradient
intersection_of: BSPO:0000051 ! anatomical gradient
intersection_of: follows_axis BSPO:0000015 ! proximal-distal axis
relationship: follows_axis BSPO:0000015 ! proximal-distal axis
[Term]
id: BSPO:0000025
name: inferior side
def: "The side that is lower relative to the substrate." [BSPO:curators]
synonym: "caudal" RELATED []
synonym: "inferior" EXACT []
is_a: BSPO:0000054 ! anatomical side
[Term]
id: BSPO:0000026
name: antero-dorsal region
def: "Anatomical region that overlaps the anterior and dorsal regions of a body or body part." [BSPO:wd]
synonym: "anterodorsal region " EXACT []
is_a: BSPO:0000071 ! anterior region
is_a: BSPO:0000079 ! dorsal region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000055 ! anterior side
intersection_of: overlaps BSPO:0000063 ! dorsal side
relationship: overlaps BSPO:0000055 ! anterior side
relationship: overlaps BSPO:0000063 ! dorsal side
created_by: Melissa Haendel
creation_date: 2009-06-15T01:01:38Z
[Term]
id: BSPO:0000027
name: antero-ventral region
def: "Anatomical region that overlaps the anterior and ventral regions of a body or body part." [BSPO:wd]
synonym: "anteroventral region " EXACT []
is_a: BSPO:0000071 ! anterior region
is_a: BSPO:0000084 ! ventral region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000055 ! anterior side
intersection_of: overlaps BSPO:0000068 ! ventral side
relationship: overlaps BSPO:0000055 ! anterior side
relationship: overlaps BSPO:0000068 ! ventral side
created_by: Melissa Haendel
creation_date: 2009-06-15T01:04:59Z
[Term]
id: BSPO:0000028
name: postero-lateral region
def: "Anatomical region that overlaps the posterior and lateral regions of the body or body part." [BSPO:wd]
synonym: "posterolateral region" EXACT []
is_a: BSPO:0000072 ! posterior region
is_a: BSPO:0000082 ! lateral region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000056 ! posterior side
intersection_of: overlaps BSPO:0000066 ! lateral side
relationship: overlaps BSPO:0000056 ! posterior side
relationship: overlaps BSPO:0000066 ! lateral side
created_by: Melissa Haendel
creation_date: 2009-06-15T01:06:01Z
[Term]
id: BSPO:0000029
name: antero-lateral region
def: "Anatomical region that overlaps the anterior and lateral regions of a body or body part." [BSPO:wd]
synonym: "anterolateral region" EXACT []
is_a: BSPO:0000071 ! anterior region
is_a: BSPO:0000082 ! lateral region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000055 ! anterior side
intersection_of: overlaps BSPO:0000066 ! lateral side
relationship: overlaps BSPO:0000055 ! anterior side
relationship: overlaps BSPO:0000066 ! lateral side
created_by: Melissa Haendel
creation_date: 2009-06-15T01:07:18Z
[Term]
id: BSPO:0000030
name: postero-dorsal region
def: "Anatomical region that overlaps the posterior and dorsal regions of the body or body part." [BSPO:wd]
synonym: "posterodorsal region" EXACT []
is_a: BSPO:0000072 ! posterior region
is_a: BSPO:0000079 ! dorsal region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000056 ! posterior side
intersection_of: overlaps BSPO:0000063 ! dorsal side
relationship: overlaps BSPO:0000056 ! posterior side
relationship: overlaps BSPO:0000063 ! dorsal side
created_by: Melissa Haendel
creation_date: 2009-06-15T01:08:13Z
[Term]
id: BSPO:0000031
name: upper region
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000001 ! upper side
relationship: overlaps BSPO:0000001 ! upper side
[Term]
id: BSPO:0000032
name: lower region
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000002 ! lower side
relationship: overlaps BSPO:0000002 ! lower side
[Term]
id: BSPO:0000033
name: deep region
def: "Anatomical region located deep within an organism or structure." [BSPO:wd]
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000003 ! deep side
relationship: overlaps BSPO:0000003 ! deep side
[Term]
id: BSPO:0000034
name: superficial region
def: "Anatomical region superficially located on the body or body part." [BSPO:wd]
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000004 ! superficial side
relationship: overlaps BSPO:0000004 ! superficial side
[Term]
id: BSPO:0000035
name: postero-ventral region
def: "Anatomical region that overlaps the posterior and ventral regions of a body or body part." [BSPO:wd]
synonym: "posteroventral region" EXACT []
is_a: BSPO:0000072 ! posterior region
is_a: BSPO:0000084 ! ventral region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000056 ! posterior side
intersection_of: overlaps BSPO:0000068 ! ventral side
relationship: overlaps BSPO:0000056 ! posterior side
relationship: overlaps BSPO:0000068 ! ventral side
created_by: Melissa Haendel
creation_date: 2009-06-15T01:08:38Z
[Term]
id: BSPO:0000036
name: anterior-most region
synonym: "anterior-most" EXACT []
synonym: "anteriormost" EXACT []
is_a: BSPO:0000071 ! anterior region
created_by: Melissa Haendel
creation_date: 2009-06-16T08:49:03Z
[Term]
id: BSPO:0000037
name: posterior-most region
synonym: "posterior-most" EXACT []
synonym: "posteriormost" EXACT []
is_a: BSPO:0000072 ! posterior region
created_by: Melissa Haendel
creation_date: 2009-06-16T08:49:50Z
[Term]
id: BSPO:0000038
name: dorsal-most region
synonym: "dorsal-most" EXACT []
synonym: "dorsalmost" EXACT []
is_a: BSPO:0000079 ! dorsal region
created_by: Melissa Haendel
creation_date: 2009-06-16T08:50:26Z
[Term]
id: BSPO:0000039
name: ventral-most region
synonym: "ventral-most" EXACT []
synonym: "ventralmost" EXACT []
is_a: BSPO:0000084 ! ventral region
created_by: Melissa Haendel
creation_date: 2009-06-16T08:51:07Z
[Term]
id: BSPO:0000040
name: upper/lower compartment boundary
is_a: BSPO:0000092 ! anatomical compartment boundary
intersection_of: BSPO:0000092 ! anatomical compartment boundary
intersection_of: has_axis BSPO:0000011 ! upper-lower axis
relationship: has_axis BSPO:0000011 ! upper-lower axis
[Term]
id: BSPO:0000041
name: deep/superficial compartment boundary
is_a: BSPO:0000092 ! anatomical compartment boundary
intersection_of: BSPO:0000092 ! anatomical compartment boundary
intersection_of: has_axis BSPO:0000012 ! deep-superficial axis
relationship: has_axis BSPO:0000012 ! deep-superficial axis
[Term]
id: BSPO:0000042
name: antero-medial margin
def: "Anatomical margin that is located on the antero-medial region of the body or body part." [BSPO:wd]
synonym: "anteromedial margin" EXACT []
is_a: BSPO:0000050 ! antero-medial region
is_a: BSPO:0000671 ! anterior margin
is_a: BSPO:0000683 ! medial margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000055 ! anterior side
intersection_of: overlaps BSPO:0000067 ! medial side
relationship: overlaps BSPO:0000055 ! anterior side
relationship: overlaps BSPO:0000067 ! medial side
created_by: Melissa Haendel
creation_date: 2009-09-10T08:49:57Z
[Term]
id: BSPO:0000043
name: apical/basal compartment boundary
is_a: BSPO:0000092 ! anatomical compartment boundary
intersection_of: BSPO:0000092 ! anatomical compartment boundary
intersection_of: has_axis BSPO:0000014 ! apical-basal axis relative to substrate
relationship: has_axis BSPO:0000014 ! apical-basal axis relative to substrate
[Term]
id: BSPO:0000044
name: proximal/distal compartment boundary
is_a: BSPO:0000092 ! anatomical compartment boundary
intersection_of: BSPO:0000092 ! anatomical compartment boundary
intersection_of: has_axis BSPO:0000015 ! proximal-distal axis
relationship: has_axis BSPO:0000015 ! proximal-distal axis
[Term]
id: BSPO:0000045
name: antero-lateral margin
def: "Anatomical margin that is located on the antero-lateral region of the body or body part." [BSPO:wd]
synonym: "anterolateral margin" EXACT []
is_a: BSPO:0000029 ! antero-lateral region
is_a: BSPO:0000671 ! anterior margin
is_a: BSPO:0000682 ! lateral margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000055 ! anterior side
intersection_of: overlaps BSPO:0000066 ! lateral side
relationship: overlaps BSPO:0000055 ! anterior side
relationship: overlaps BSPO:0000066 ! lateral side
created_by: Melissa Haendel
creation_date: 2009-09-10T08:50:37Z
[Term]
id: BSPO:0000046
name: postero-medial margin
def: "Anatomical margin that is located on the postero-medial region of the body or body part." [BSPO:wd]
synonym: "posteromedial margin" EXACT []
is_a: BSPO:0000064 ! postero-medial region
is_a: BSPO:0000672 ! posterior margin
is_a: BSPO:0000683 ! medial margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000056 ! posterior side
intersection_of: overlaps BSPO:0000067 ! medial side
relationship: overlaps BSPO:0000056 ! posterior side
relationship: overlaps BSPO:0000067 ! medial side
created_by: Melissa Haendel
creation_date: 2009-09-10T08:51:07Z
[Term]
id: BSPO:0000047
name: postero-lateral margin
def: "Anatomical margin that is located on the postero-lateral region of the body or body part." [BSPO:wd]
synonym: "posterolateral margin" EXACT []
is_a: BSPO:0000028 ! postero-lateral region
is_a: BSPO:0000672 ! posterior margin
is_a: BSPO:0000682 ! lateral margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000056 ! posterior side
intersection_of: overlaps BSPO:0000066 ! lateral side
relationship: overlaps BSPO:0000056 ! posterior side
relationship: overlaps BSPO:0000066 ! lateral side
created_by: Melissa Haendel
creation_date: 2009-09-10T08:51:42Z
[Term]
id: BSPO:0000048
name: dorso-medial margin
def: "Anatomical margin that is located on the dorso-medial region of the body or body part." [BSPO:wd]
synonym: "dorso-medial margin" EXACT []
is_a: BSPO:0000069 ! dorso-medial region
is_a: BSPO:0000679 ! dorsal margin
is_a: BSPO:0000683 ! medial margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000063 ! dorsal side
intersection_of: overlaps BSPO:0000067 ! medial side
relationship: overlaps BSPO:0000063 ! dorsal side
relationship: overlaps BSPO:0000067 ! medial side
created_by: Melissa Haendel
creation_date: 2009-09-10T08:52:04Z
[Term]
id: BSPO:0000049
name: ventro-medial margin
def: "Anatomical margin that is located on the ventro-medial region of the body or body part." [BSPO:wd]
synonym: "ventromedial margin" EXACT []
is_a: BSPO:0000112 ! ventro-medial region
is_a: BSPO:0000683 ! medial margin
is_a: BSPO:0000684 ! ventral margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000067 ! medial side
intersection_of: overlaps BSPO:0000068 ! ventral side
relationship: overlaps BSPO:0000067 ! medial side
relationship: overlaps BSPO:0000068 ! ventral side
created_by: Melissa Haendel
creation_date: 2009-09-10T08:52:48Z
[Term]
id: BSPO:0000050
name: antero-medial region
def: "Anatomical region that overlaps the anterior and medial regions of the body or body part." [BSPO:wd]
synonym: "anteromedial region" EXACT []
is_a: BSPO:0000071 ! anterior region
is_a: BSPO:0000083 ! medial region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000055 ! anterior side
intersection_of: overlaps BSPO:0000067 ! medial side
relationship: overlaps BSPO:0000055 ! anterior side
relationship: overlaps BSPO:0000067 ! medial side
created_by: Melissa Haendel
creation_date: 2009-09-10T08:55:32Z
[Term]
id: BSPO:0000051
name: anatomical gradient
def: "Material anatomical entity defined by change in the value of some quantity per unit of distance across some spatial axis." [BSPO:cjm]
xref: FBql:00005254
is_a: CARO:0000006 ! material anatomical entity
[Term]
id: BSPO:0000052
name: anterior-posterior gradient
def: "Anatomical gradient that is distributed along the anterior-posterior axis." [BSPO:wd]
xref: FBcv:0000142
xref: FBql:00005256
is_a: BSPO:0000051 ! anatomical gradient
intersection_of: BSPO:0000051 ! anatomical gradient
intersection_of: has_axis BSPO:0000013 ! anterior-posterior axis
relationship: has_axis BSPO:0000013 ! anterior-posterior axis
[Term]
id: BSPO:0000053
name: dorsal-ventral gradient
def: "Anatomical gradient that is distributed along the dorsal-ventral axis." [BSPO:wd]
xref: FBcv:0000143
xref: FBql:00005255
is_a: BSPO:0000051 ! anatomical gradient
intersection_of: BSPO:0000051 ! anatomical gradient
intersection_of: has_axis BSPO:0000016 ! dorsal-ventral axis
relationship: has_axis BSPO:0000016 ! dorsal-ventral axis
[Term]
id: BSPO:0000054
name: anatomical side
def: "An anatomical region bounded by a plane perpendicular to an axis through the middle." [BSPO:cjm]
xref: FBql:00005841
is_a: BSPO:0000070 ! anatomical region
[Term]
id: BSPO:0000055
name: anterior side
def: "An anatomical region that is the entire part of an anatomical structure anterior to a transverse plane and bounded on one side by the same transverse plane." [BSPO:RW]
synonym: "anterior" EXACT []
synonym: "rostral" EXACT []
xref: FBcv:0000053
xref: FBql:00005848
is_a: BSPO:0000054 ! anatomical side
relationship: anterior_to BSPO:0000056 ! posterior side
relationship: opposite_to BSPO:0000056 ! posterior side
relationship: starts_axis BSPO:0000013 ! anterior-posterior axis
[Term]
id: BSPO:0000056
name: posterior side
def: "An anatomical region that is the entire part of an anatomical structure posterior to a transverse plane and bounded on one side by the same transverse plane." [BSPO:RW, BSPO:wd]
synonym: "caudal" NARROW vertebrate []
synonym: "posterior" EXACT []
xref: FBcv:0000065
xref: FBql:00005849
is_a: BSPO:0000054 ! anatomical side
relationship: finishes_axis BSPO:0000013 ! anterior-posterior axis
relationship: posterior_to BSPO:0000055 ! anterior side
[Term]
id: BSPO:0000057
name: apical side
def: "Anatomical side that is located on the apical end of an organism or structure." [BSPO:wd]
synonym: "apical" EXACT []
xref: FBcv:0000054
xref: FBql:00005854
is_a: BSPO:0000054 ! anatomical side
relationship: opposite_to BSPO:0000058 ! basal side
relationship: starts_axis BSPO:0000014 ! apical-basal axis relative to substrate
[Term]
id: BSPO:0000058
name: basal side
def: "Anatomical side that is located on the basal end of an organism or structure." [BSPO:wd]
comment: The part of the organism attached to a substrate. Axis of symmetry.
synonym: "basal" EXACT []
xref: FBcv:0000055
xref: FBql:00005855
is_a: BSPO:0000054 ! anatomical side
relationship: finishes_axis BSPO:0000014 ! apical-basal axis relative to substrate
[Term]
id: BSPO:0000059
name: central side
def: "Anatomical side that is centrally located on an organism or structure." [BSPO:wd]
comment: central is not an axis direction
synonym: "central" EXACT []
xref: FBcv:0000056
xref: FBql:00015851
is_a: BSPO:0000054 ! anatomical side
[Term]
id: BSPO:0000060
name: contralateral side
def: "On the opposite side." [BSPO:cjm]
comment: inherited from flybase cv. not clear how this would be used. Suggest we obsolete, and use the corresponding relation.
synonym: "contralateral" EXACT []
xref: FBcv:0000057
xref: FBql:00005851
is_a: BSPO:0000054 ! anatomical side
[Term]
id: BSPO:0000061
name: proximal side
synonym: "proximal" EXACT []
xref: FBcv:0000066
xref: FBql:00005852
is_a: BSPO:0000054 ! anatomical side
relationship: opposite_to BSPO:0000062 ! distal side
relationship: starts_axis BSPO:0000015 ! proximal-distal axis
[Term]
id: BSPO:0000062
name: distal side
def: "Anatomical side that is distally located on an organism or structure." [BSPO:wd]
synonym: "distal" EXACT []
xref: FBcv:0000058
xref: FBql:00005853
is_a: BSPO:0000054 ! anatomical side
relationship: distal_to BSPO:0000061 ! proximal side
relationship: finishes_axis BSPO:0000015 ! proximal-distal axis
[Term]
id: BSPO:0000063
name: dorsal side
def: "An anatomical region that is the entire part of an anatomical structure dorsal to a horizontal plane and bounded on one side by the same transverse plane." [BSPO:wd]
synonym: "dorsal" EXACT []
xref: FBcv:0000059
xref: FBql:00005842
is_a: BSPO:0000054 ! anatomical side
relationship: dorsal_to BSPO:0000066 ! lateral side
relationship: opposite_to BSPO:0000068 ! ventral side
relationship: starts_axis BSPO:0000016 ! dorsal-ventral axis
[Term]
id: BSPO:0000064
name: postero-medial region
def: "Anatomical region that overlaps the posterior and medial regions of the body or body part." [BSPO:wd]
synonym: "posteromedial region" EXACT []
is_a: BSPO:0000072 ! posterior region
is_a: BSPO:0000083 ! medial region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000056 ! posterior side
intersection_of: overlaps BSPO:0000067 ! medial side
relationship: overlaps BSPO:0000056 ! posterior side
relationship: overlaps BSPO:0000067 ! medial side
created_by: Melissa Haendel
creation_date: 2009-09-10T08:56:39Z
[Term]
id: BSPO:0000065
name: ipsilateral side
def: "On the same side" [BSPO:cjm]
comment: inherited from flybase cv. not clear how this would be used. Suggest we obsolete, and use the corresponding relation.
synonym: "ipsilateral" EXACT []
xref: FBcv:0000062
xref: FBql:00005850
is_a: BSPO:0000054 ! anatomical side
[Term]
id: BSPO:0000066
name: lateral side
synonym: "lateral" EXACT []
xref: FBcv:0000063
xref: FBql:00005844
is_a: BSPO:0000054 ! anatomical side
[Term]
id: BSPO:0000067
name: medial side
comment: a point in the centre of the organism (where the left-right axis intersects the midsagittal plane)
synonym: "medial" EXACT []
xref: FBcv:0000064
xref: FBql:00005847
is_a: BSPO:0000054 ! anatomical side
[Term]
id: BSPO:0000068
name: ventral side
def: "An anatomical region that is the entire part of an anatomical structure ventral to a horizontal plane and bounded on one side by the same horizontal plane." [BSPO:RW, BSPO:wd]
synonym: "ventral" EXACT []
xref: FBcv:0000070
xref: FBql:00005843
is_a: BSPO:0000054 ! anatomical side
relationship: finishes_axis BSPO:0000016 ! dorsal-ventral axis
[Term]
id: BSPO:0000069
name: dorso-medial region
def: "Anatomical region that overlaps the dorsal and medial regions of the body or body part." [BSPO:wd]
synonym: "dorsomedial region" EXACT []
is_a: BSPO:0000079 ! dorsal region
is_a: BSPO:0000083 ! medial region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000063 ! dorsal side
intersection_of: overlaps BSPO:0000067 ! medial side
relationship: overlaps BSPO:0000063 ! dorsal side
relationship: overlaps BSPO:0000067 ! medial side
created_by: Melissa Haendel
creation_date: 2009-09-10T08:57:22Z
[Term]
id: BSPO:0000070
name: anatomical region
def: "A 3D region in space without well-defined compartmental boundaries; for example, the dorsal region of an ectoderm." [BSPO:cjm]
comment: to be merged into CARO
xref: FBql:00005841
is_a: CARO:0000003 ! anatomical structure
[Term]
id: BSPO:0000071
name: anterior region
def: "Anatomical region anteriorly located on the body or body part." [BSPO:wd]
xref: FBql:00005848
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000055 ! anterior side
relationship: overlaps BSPO:0000055 ! anterior side
[Term]
id: BSPO:0000072
name: posterior region
def: "Anatomical region posteriorly located on the body or body part." [BSPO:wd]
xref: FBql:00005849
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000056 ! posterior side
relationship: overlaps BSPO:0000056 ! posterior side
[Term]
id: BSPO:0000073
name: apical region
def: "Anatomical region located on the apical end on the body or body part." [BSPO:wd]
xref: FBql:00005854
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000057 ! apical side
relationship: overlaps BSPO:0000057 ! apical side
[Term]
id: BSPO:0000074
name: basal region
def: "Anatomical region located basally on the body or body part." [BSPO:wd]
xref: FBql:00005855
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000058 ! basal side
relationship: overlaps BSPO:0000058 ! basal side
[Term]
id: BSPO:0000075
name: central region
def: "Anatomical region centrally located on the body or body part." [BSPO:wd]
xref: FBql:00015851
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000059 ! central side
relationship: overlaps BSPO:0000059 ! central side
[Term]
id: BSPO:0000076
name: contralateral region
comment: inherited from flybase cv. not clear how this would be used
xref: FBql:00005851
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000060 ! contralateral side
relationship: overlaps BSPO:0000060 ! contralateral side
[Term]
id: BSPO:0000077
name: proximal region
def: "Anatomical region proximally located on the body or body part." [BSPO:wd]
xref: FBql:00005852
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000061 ! proximal side
relationship: overlaps BSPO:0000061 ! proximal side
[Term]
id: BSPO:0000078
name: distal region
def: "Anatomical region distally located on the body or body part." [BSPO:wd]
xref: FBql:00005853
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000062 ! distal side
relationship: overlaps BSPO:0000062 ! distal side
[Term]
id: BSPO:0000079
name: dorsal region
def: "Anatomical region dorsally located on the body or body part." [BSPO:wd]
xref: FBql:00005842
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000063 ! dorsal side
relationship: overlaps BSPO:0000063 ! dorsal side
[Term]
id: BSPO:0000080
name: dorso-lateral region
def: "Anatomical region that overlaps the dorsal and lateral regions of a body or body part." [BSPO:wd]
synonym: "dorsolateral region" EXACT []
xref: FBql:00005845
is_a: BSPO:0000079 ! dorsal region
is_a: BSPO:0000082 ! lateral region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000063 ! dorsal side
intersection_of: overlaps BSPO:0000066 ! lateral side
relationship: overlaps BSPO:0000063 ! dorsal side
relationship: overlaps BSPO:0000066 ! lateral side
[Term]
id: BSPO:0000081
name: ipsilateral region
xref: FBql:00005850
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000065 ! ipsilateral side
relationship: overlaps BSPO:0000065 ! ipsilateral side
[Term]
id: BSPO:0000082
name: lateral region
def: "Anatomical region laterally located on the body or body part." [BSPO:wd]
xref: FBql:00005844
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000066 ! lateral side
relationship: overlaps BSPO:0000066 ! lateral side
[Term]
id: BSPO:0000083
name: medial region
def: "Anatomical region medially located on the body or body part." [BSPO:wd]
xref: FBql:00005847
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000067 ! medial side
relationship: overlaps BSPO:0000067 ! medial side
[Term]
id: BSPO:0000084
name: ventral region
def: "Anatomical region ventrally located on the body or body part." [BSPO:wd]
xref: FBql:00005843
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000068 ! ventral side
relationship: overlaps BSPO:0000068 ! ventral side
[Term]
id: BSPO:0000085
name: ventro-lateral region
def: "Anatomical region that overlaps the ventral and lateral regions of a body or body part." [BSPO:wd]
comment: This is an example of a composition of two axis positions.
synonym: "ventrolateral region" EXACT []
xref: FBql:00005846
is_a: BSPO:0000082 ! lateral region
is_a: BSPO:0000084 ! ventral region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000066 ! lateral side
intersection_of: overlaps BSPO:0000068 ! ventral side
relationship: overlaps BSPO:0000066 ! lateral side
relationship: overlaps BSPO:0000068 ! ventral side
[Term]
id: BSPO:0000086
name: anatomical compartment
comment: to be merged into CARO
xref: FBql:00005873
xref: FMA:9647
is_a: CARO:0000003 ! anatomical structure
[Term]
id: BSPO:0000087
name: anterior compartment
xref: FBcv:0000031
xref: FBql:00005874
is_a: BSPO:0000086 ! anatomical compartment
[Term]
id: BSPO:0000088
name: compartment boundary
xref: FBcv:0000032
xref: FBql:00005878
is_a: BSPO:0000086 ! anatomical compartment
[Term]
id: BSPO:0000089
name: dorsal compartment
xref: FBcv:0000035
xref: FBql:00005876
is_a: BSPO:0000086 ! anatomical compartment
[Term]
id: BSPO:0000090
name: posterior compartment
xref: FBcv:0000036
xref: FBql:00005875
is_a: BSPO:0000086 ! anatomical compartment
[Term]
id: BSPO:0000091
name: ventral compartment
xref: FBcv:0000037
xref: FBql:00005877
is_a: BSPO:0000086 ! anatomical compartment
[Term]
id: BSPO:0000092
name: anatomical compartment boundary
comment: to be merged into CARO
xref: FBql:00005881
is_a: CARO:0000010 ! anatomical boundary
[Term]
id: BSPO:0000093
name: anterior/posterior compartment boundary
xref: FBcv:0000033
xref: FBql:00005880
is_a: BSPO:0000092 ! anatomical compartment boundary
[Term]