Merge branch 'wp6-update' of github.com:numpex/exa-ma-d7.1 into wp6-u…

…pdate

.vscode/settings.json

@@ -42,5 +42,6 @@
     "latex-workshop.latex.autoBuild.enabled": true,
     "latex-workshop.latex.build.showOutput": "always",
     "latex-workshop.latex.outDir": "%DIR%",
-    "latex-workshop.message.badbox.show": "none"
+    "latex-workshop.message.badbox.show": "none",
+    "workbench.editor.pinnedTabsOnSeparateRow": true
 }

chapters/00-index.tex

@@ -1,24 +1,30 @@
 \chapter{WP1 - Discretization}
+\label{chap:wp1}
 \clearpage
 \subimport{./WP1}{00-index}
 
 \chapter{WP2 - Model order, Surrogate, Scientific Machine Learning methods}
+\label{chap:wp2}
 \clearpage
 \subimport{./WP2}{00-index}
 
 \chapter{WP3 - Solvers}
+\label{chap:wp3}
 \clearpage
 \subimport{./WP3}{00-index}
 
 \chapter{WP4 - Data assimilation}
+\label{chap:wp4}
 \clearpage
 \subimport{./WP4}{00-index}
 
 \chapter{WP5 - Optimization}
+\label{chap:wp5}
 \clearpage
 \subimport{./WP5}{00-index}
 
 \chapter{WP6 - Uncertainty quantification}
+\label{chap:wp6}
 \clearpage
 \subimport{./WP6}{00-index}
 

chapters/software.tex

@@ -180,7 +180,7 @@ \subsection{DevOps - Testing}
 \input{software/freefempp/freefempp.tex}
 \input{software/hawen/hawen.tex}
 \input{software/hpddm/hpddm.tex}
-\input{software/mahyco/mahyco.tex}
+%%\input{software/mahyco/mahyco.tex}
 \input{software/manta/manta.tex}
 \input{software/pbb/pbb.tex}
 \input{software/samurai/samurai.tex}

exa-ma-d7.1.tex

@@ -32,7 +32,6 @@
 \usepackage{pgfplots}
 \usepackage{pgfplotstable}
 \pgfplotsset{compat=newest}
-\usepackage{tikz} 
 \usetikzlibrary{positioning,fit,matrix}
 
 \definecolor{bgcolor}{gray}{0.95}
@@ -54,7 +53,7 @@
 \definecolor{CustomBlue}{rgb}{0.25, 0.41, 0.88} % RoyalBlue
 \hypersetup{
 	pdftitle={Benchmarking analysis report},
-	pdfauthor={[Names of co-authors (partners short names)]},
+	pdfauthor={[Christophe Prud'homme (UNISTRA), Pierre Alliez (INRIA), Vincent Chabannes (UNISTRA), Rudy Chocat (CEA), Emmanuel Franck (INRIA), Vincent Fraucher (CEA), Floriant Faucher (INRIA), Clément Gauchy (CEA), Christos Georgiadis (INRIA), Luc Giraud (INRIA), Frédéric Hecht (SU), Pierre Jolivet (CNRS), Pierre Ledac (CEA), Gilles Marait (INRIA), Victor Michel-Dansac (INRIA), Frédéric Nataf (SU), Lucas Palazzolo (INRIA), Yannick Privat (UL), Thomas Saigre-Tardif (UNISTRA), Christophe Trophime (CNRS), Pierre Henri Tournier (SU), Céline Van Landeghem (UNISTRA), Raphael Zanella (SU)]},
 	pdfkeywords={HPC, Exascale, Benchmarking},
     bookmarksnumbered,linktocpage,
     colorlinks=true,
@@ -123,17 +122,17 @@
 \delivResponsible{UNISTRA}
 
 % Deliverable Version, Contractual and Actual Date, Dissemination Level, Type
-\delivVersion{v0.0.6}
+\delivVersion{v0.2.0}
 \ContractualDate{15/10/2024}
 \ActualDate{\today}
 \delivDissLevel{PU} % PU, PP, RE, CO
 \delivType{Report}
 
 % List of Main Authors (usually from the responsible partner)
-\delivAuthor{[Names of co-authors (partners short names)]}
+\delivAuthor{[Christophe Prud'homme (UNISTRA)]}
 
 % List of Co-Authors (all other co-authors should be listed here)
-\delivFPAuthor{[Names of co-authors (partners short names)]}
+\delivFPAuthor{[Pierre Alliez (INRIA), Vincent Chabannes (UNISTRA), Rudy Chocat (CEA), Emmanuel Franck (INRIA), Vincent Fraucher (CEA), Floriant Faucher (INRIA), Clément Gauchy (CEA), Christos Georgiadis (INRIA), Luc Giraud (INRIA), Frédéric Hecht (SU), Olivier Jamond (CEA), Pierre Jolivet (CNRS), Pierre Ledac (CEA), Gilles Marait (INRIA), Victor Michel-Dansac (INRIA), Frédéric Nataf (SU), Lucas Palazzolo (INRIA), Yannick Privat (UL), Thomas Saigre-Tardif (UNISTRA), Christophe Trophime (CNRS), Pierre Henri Tournier (SU), Céline Van Landeghem (UNISTRA), Raphael Zanella (SU) ]}
 
 % Provision of Keywords (about 5-10)
 \delivKeywords{HPC, Exascale, Benchmarking, Software}
@@ -145,15 +144,15 @@
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 %%% Change Log
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-\istChange{08/10/2024}{v0.2.0}{Prud'homme Christophe (UNISTRA), Thomas Saigre (UNISTRA), Vincent Chabannes(UNISTRA), Céline Van Landeghem (UNISTRA), Victor Dansac(UNISTRA,INRIA),Christos Georgiadis (INRIA), Pierre Alliez(INRIA), Clément Gauchy (CEA), Rudy Rochat(CEA)}{Initial contributions}
+\istChange{11/10/2024}{v0.2.0}{\href{https://github.com/numpex/exa-ma-d7.1/graphs/contributors}{+14 Contributors}}{Initial contributions}
 \istChange{30/09/2024}{v0.1.0}{Prud'homme Christophe (UNISTRA)}{setup architecture of D7.1, update profiling tools in toc, updates in methodology chapter, add information store in excel sheet in the report,update benchmark methodology}
 \istChange{27/09/2024}{v0.0.6}{Prud'homme Christophe (UNISTRA)}{In the methodology chapter, link the deliverable to the bottlenecks identified in Exa-MA scientific document. Add resilience stats and methdology, benchmark mmg and parmmg indirectly.}
 \istChange{26/09/2024}{v0.0.6}{Pierre Jolivet (CNRS)}{Review of the document}
 \istChange{16/09/2024}{v0.0.5}{Prud'homme Christophe (UNISTRA)}{ToC: add list of computer science features per software, add list of math features per workpackage, add statistics about Exa-MA software in chapter Software}
 \istChange{02/09/2024}{v0.0.4}{Prud'homme Christophe (UNISTRA)}{ToC: add profiling tools in methodology chapter and udated the chapter overall}
 \istChange{30/08/2024}{v0.0.3}{Prud'homme Christophe (UNISTRA)}{ToC: setup architecture of D7.1;add benchmarking methodology chapter;add samurai software to be benchmarked}
 \istChange{20/08/2024}{v0.0.1}{Prud'homme Christophe (UNISTRA)}{Draft report template}
-\istChange{}{}{}{}
+%%\istChange{}{}{}{}
 
 
 \begin{document}
@@ -207,6 +206,7 @@ \chapter{Introduction}
 \import{chapters/}{00-index}
 
 \chapter{Conclusions}
+\label{chap:conclusions}
 \input{sections/conclusions}
 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

gitHeadLocal.gin

@@ -1,17 +1,17 @@
 \usepackage[%
-        shash={b26bd7c},
-        lhash={b26bd7c5389f87390796c7310db5829e332eb9b6},
+        shash={33226e4},
+        lhash={33226e4c3c8eb1f0f7aafc37af995d5e65515962},
         authname={Christophe Prud'homme},
         authemail={christophe.prudhomme@cemosis.fr},
-        authsdate={2024-09-27},
-        authidate={2024-09-27 13:21:07 +0200},
-        authudate={1727436067},
+        authsdate={2024-10-11},
+        authidate={2024-10-11 09:05:41 +0200},
+        authudate={1728630341},
         commname={Christophe Prud'homme},
         commemail={christophe.prudhomme@cemosis.fr},
-        commsdate={2024-09-27},
-        commidate={2024-09-27 13:21:07 +0200},
-        commudate={1727436067},
-        refnames={ (HEAD -> main, tag: v0.1.0, origin/main, origin/HEAD)},
-        firsttagdescribe={v0.1.0},
-        reltag={v0.1.0-0-gb26bd7c}
+        commsdate={2024-10-11},
+        commidate={2024-10-11 09:05:41 +0200},
+        commudate={1728630341},
+        refnames={ (HEAD -> main, tag: v0.2.0, origin/main, origin/HEAD)},
+        firsttagdescribe={v0.2.0},
+        reltag={v0.2.0-0-g33226e4}
     ]{gitexinfo}