Skip to content

Commit

Permalink
paper code
Browse files Browse the repository at this point in the history
  • Loading branch information
Thu Nguyen committed Nov 3, 2020
0 parents commit 0cc3404
Show file tree
Hide file tree
Showing 7 changed files with 11,285 additions and 0 deletions.
146 changes: 146 additions & 0 deletions CLUSTERS.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,146 @@
ClNumber Nds Clheight IDs
0001 2 0.033 28 95
0002 2 0.036 91 123
0003 2 0.037 106 107
0004 2 0.039 92 112
0005 2 0.039 98 104
0006 2 0.041 14 60
0007 2 0.041 52 84
0008 2 0.042 20 36
0009 2 0.044 70 93
0010 2 0.046 108 109
0011 2 0.046 15 55
0012 3 0.047 15 55 65
0013 3 0.047 20 27 36
0014 2 0.048 17 32
0015 3 0.049 28 72 95
0016 3 0.050 17 32 102
0017 2 0.051 11 111
0018 2 0.052 25 99
0019 2 0.053 35 80
0020 2 0.053 40 49
0021 2 0.054 75 101
0022 2 0.054 30 64
0023 2 0.054 5 130
0024 3 0.054 47 52 84
0025 3 0.056 67 91 123
0026 2 0.056 139 140
0027 2 0.058 34 90
0028 2 0.059 103 137
0029 4 0.060 15 55 65 81
0030 3 0.063 41 98 104
0031 2 0.065 18 89
0032 2 0.067 26 74
0033 3 0.067 30 45 64
0034 3 0.068 25 85 99
0035 2 0.068 86 116
0036 2 0.069 42 57
0037 3 0.069 16 75 101
0038 2 0.069 4 13
0039 2 0.070 54 79
0040 4 0.071 28 71 72 95
0041 2 0.073 83 96
0042 4 0.074 29 67 91 123
0043 3 0.074 5 130 131
0044 3 0.075 8 139 140
0045 2 0.075 51 128
0046 4 0.077 25 85 99 118
0047 3 0.078 11 19 111
0048 2 0.078 12 105
0049 5 0.080 15 55 65 81 100
0050 5 0.080 28 71 72 73 95
0051 4 0.081 42 57 70 93
0052 2 0.082 124 125
0053 2 0.084 56 59
0054 3 0.086 40 44 49
0055 2 0.086 37 50
0056 2 0.087 21 87
0057 3 0.090 54 79 88
0058 2 0.092 6 134
0059 2 0.092 9 142
0060 4 0.093 47 52 53 84
0061 3 0.093 103 137 138
0062 3 0.094 56 59 66
0063 4 0.095 106 107 108 109
0064 2 0.096 1 7
0065 6 0.097 14 29 60 67 91 123
0066 3 0.100 37 50 94
0067 2 0.102 145 146
0068 3 0.102 12 105 115
0069 2 0.102 135 141
0070 3 0.104 4 13 129
0071 4 0.104 37 50 63 94
0072 3 0.104 83 96 122
0073 6 0.105 11 19 30 45 64 111
0074 7 0.106 20 27 36 47 52 53 84
0075 2 0.107 43 113
0076 2 0.107 22 23
0077 5 0.107 25 77 85 99 118
0078 4 0.109 17 32 33 102
0079 3 0.109 135 136 141
0080 3 0.110 1 7 133
0081 5 0.113 5 51 128 130 131
0082 5 0.114 18 40 44 49 89
0083 4 0.115 31 41 98 104
0084 3 0.117 6 127 134
0085 4 0.119 38 54 79 88
0086 2 0.123 46 119
0087 5 0.125 43 56 59 66 113
0088 9 0.127 25 42 57 70 77 85 93 99 118
0089 4 0.130 6 76 127 134
0090 6 0.130 3 5 51 128 130 131
0091 3 0.132 21 68 87
0092 5 0.133 106 107 108 109 117
0093 4 0.134 126 135 136 141
0094 5 0.140 12 34 90 105 115
0095 6 0.145 43 56 59 66 110 113
0096 3 0.147 26 74 78
0097 11 0.152 14 18 29 40 44 49 60 67 89 91 123
0098 3 0.152 46 62 119
0099 3 0.155 48 124 125
0100 6 0.157 17 32 33 86 102 116
0101 4 0.165 4 13 97 129
0102 7 0.165 3 5 51 128 130 131 143
0103 12 0.170 15 20 27 36 47 52 53 55 65 81 84 100
0104 9 0.170 11 19 30 45 46 62 64 111 119
0105 5 0.177 37 50 58 63 94
0106 5 0.186 16 22 23 75 101
0107 2 0.190 69 82
0108 4 0.192 1 2 7 133
0109 6 0.198 9 126 135 136 141 142
0110 13 0.206 25 38 42 54 57 70 77 79 85 88 93 99 118
0111 4 0.208 69 82 145 146
0112 16 0.213 8 25 38 42 54 57 70 77 79 85 88 93 99 118 139 140
0113 13 0.227 14 18 29 35 40 44 49 60 67 80 89 91 123
0114 5 0.233 6 76 121 127 134
0115 7 0.236 16 22 23 75 92 101 112
0116 10 0.239 11 19 30 45 46 62 64 111 119 120
0117 16 0.253 14 18 26 29 35 40 44 49 60 67 74 78 80 89 91 123
0118 13 0.253 3 5 43 51 56 59 66 110 113 128 130 131 143
0119 10 0.256 17 31 32 33 41 86 98 102 104 116
0120 10 0.269 28 37 50 58 63 71 72 73 94 95
0121 23 0.277 3 5 28 37 43 50 51 56 58 59 63 66 71 72 73 94 95 110 113 128 130 131 143
0122 9 0.281 4 12 13 34 90 97 105 115 129
0123 21 0.304 8 25 38 42 54 57 70 77 79 85 88 93 99 106 107 108 109 117 118 139 140
0124 2 0.319 39 61
0125 9 0.324 1 2 6 7 76 121 127 133 134
0126 10 0.327 9 69 82 126 135 136 141 142 145 146
0127 2 0.344 10 132
0128 13 0.390 9 69 82 103 126 135 136 137 138 141 142 145 146
0129 13 0.391 11 19 30 45 46 62 64 83 96 111 119 120 122
0130 3 0.409 10 114 132
0131 37 0.419 8 14 18 25 26 29 35 38 40 42 44 49 54 57 60 67 70 74 77 78 79 80 85 88 89 91 93 99 106 107 108 109 117 118 123 139 140
0132 21 0.419 4 12 13 15 20 27 34 36 47 52 53 55 65 81 84 90 97 100 105 115 129
0133 4 0.490 21 24 68 87
0134 17 0.491 16 17 22 23 31 32 33 41 75 86 92 98 101 102 104 112 116
0135 30 0.521 11 16 17 19 22 23 30 31 32 33 41 45 46 62 64 75 83 86 92 96 98 101 102 104 111 112 116 119 120 122
0136 5 0.529 21 24 68 87 144
0137 44 0.601 3 4 5 12 13 15 20 27 28 34 36 37 43 47 50 51 52 53 55 56 58 59 63 65 66 71 72 73 81 84 90 94 95 97 100 105 110 113 115 128 129 130 131 143
0138 49 0.669 3 4 5 12 13 15 20 21 24 27 28 34 36 37 43 47 50 51 52 53 55 56 58 59 63 65 66 68 71 72 73 81 84 87 90 94 95 97 100 105 110 113 115 128 129 130 131 143 144
0139 12 0.675 1 2 6 7 48 76 121 124 125 127 133 134
0140 16 0.738 9 10 69 82 103 114 126 132 135 136 137 138 141 142 145 146
0141 32 0.791 11 16 17 19 22 23 30 31 32 33 39 41 45 46 61 62 64 75 83 86 92 96 98 101 102 104 111 112 116 119 120 122
0142 86 1.099 3 4 5 8 12 13 14 15 18 20 21 24 25 26 27 28 29 34 35 36 37 38 40 42 43 44 47 49 50 51 52 53 54 55 56 57 58 59 60 63 65 66 67 68 70 71 72 73 74 77 78 79 80 81 84 85 87 88 89 90 91 93 94 95 97 99 100 105 106 107 108 109 110 113 115 117 118 123 128 129 130 131 139 140 143 144
0143 28 1.483 1 2 6 7 9 10 48 69 76 82 103 114 121 124 125 126 127 132 133 134 135 136 137 138 141 142 145 146
0144 118 1.517 3 4 5 8 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 70 71 72 73 74 75 77 78 79 80 81 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 104 105 106 107 108 109 110 111 112 113 115 116 117 118 119 120 122 123 128 129 130 131 139 140 143 144
0145 146 5.592 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146
7 changes: 7 additions & 0 deletions README
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
The folder contains two main python files for color-coded data analysis.
- Ellipsoid.py generates the dendrogram and coordinate variation ellipsoid
- Cellcluster.py generates scatter plot for cell-based cluster visuallization

The files: cctable.dat, CLUSTERS.txt, manual_coordinate_146.txt are inputs of ellipsoid.py. Here we use height cutoff at 1.0 to get the output of the paper
The files: cell_base.cvs is the input of cellcluster.py
The program runs with python 3.8
Loading

0 comments on commit 0cc3404

Please sign in to comment.