renaming funs and adding desc to julia

noriakis · Feb 3, 2025 · a8996c8 · a8996c8
1 parent bedb3f7
commit a8996c8
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diff --git a/R/getKEGGEdges.R b/R/getKEGGEdges.R
@@ -13,7 +13,7 @@
 #' @export
 #' @importFrom dplyr filter select
 #' @importFrom igraph feedback_arc_set
-getKEGGedges <- function(pathID, args=list(), largestComponents=TRUE, bn=TRUE,
+getKEGGEdges <- function(pathID, args=list(), largestComponents=TRUE, bn=TRUE,
   removeCycle=FALSE) {
     if (!requireNamespace("ggkegg")) {
         stop("Needs ggkegg. Please install from Bioconductor.")

diff --git a/R/utils.R b/R/utils.R
@@ -1,5 +1,6 @@
 #' Performs PIDC inference based on Julia implementation, using JuliaCall
 #' You should have already done `julia_setup` in JuliaCall
+#' Also, we need `CSV` packages installed beforehand to interact with R environment.
 #' @noRd
 pidc.using.julia <- function(data, tmp="./scstruc_pidc_tmp",
     NetworkInference_HOME, thresholds=seq(0.1, 0.4, 0.1),