Merge branch 'release/1.14.4'

* release/1.14.4:
  1.14.4
  Updated changelog
  1.14.4
  Fixes #340

CHANGELOG.md

@@ -3,6 +3,11 @@
 Issue numbers (e.g., #43) refer to GitHub issues:
 https://github.com/nilsreiter/CorefAnnotator/issues
 
+## 1.14.4
+
+- Fixed a bug caused by old flags no longer being generated 
+  automatically #340
+
 ## 1.14.3
 
 - Added that wide-spaced text is now displayed with a serif font #315

pom.xml

@@ -4,7 +4,7 @@
 	<modelVersion>4.0.0</modelVersion>
 	<groupId>de.unistuttgart.ims</groupId>
 	<artifactId>coref.annotator</artifactId>
-	<version>1.14.3</version>
+	<version>1.14.4</version>
 	<packaging>jar</packaging>
 	<name>CorefAnnotator</name>
 	<url>https://github.com/nilsreiter/CorefAnnotator/</url>

src/main/java/de/unistuttgart/ims/coref/annotator/uima/VerifyFlagObjects.java

@@ -0,0 +1,68 @@
+package de.unistuttgart.ims.coref.annotator.uima;
+
+import org.apache.uima.analysis_engine.AnalysisEngineProcessException;
+import org.apache.uima.fit.component.JCasAnnotator_ImplBase;
+import org.apache.uima.fit.util.JCasUtil;
+import org.apache.uima.jcas.JCas;
+import org.eclipse.collections.api.set.MutableSet;
+import org.eclipse.collections.impl.factory.Sets;
+import org.kordamp.ikonli.materialdesign.MaterialDesign;
+
+import de.unistuttgart.ims.coref.annotator.api.v1.Entity;
+import de.unistuttgart.ims.coref.annotator.api.v1.Flag;
+import de.unistuttgart.ims.coref.annotator.api.v1.Mention;
+
+public class VerifyFlagObjects extends JCasAnnotator_ImplBase {
+
+	@Override
+	public void process(JCas jcas) throws AnalysisEngineProcessException {
+
+		MutableSet<Flag> flags = Sets.mutable.ofAll(JCasUtil.select(jcas, Flag.class));
+
+		for (Entity entity : JCasUtil.select(jcas, Entity.class)) {
+			if (entity.getFlags() != null)
+				for (String flagKey : entity.getFlags()) {
+					boolean ok = false;
+					for (Flag flag : flags) {
+						if (flag.getKey().equalsIgnoreCase(flagKey)
+								&& flag.getTargetClass().equalsIgnoreCase(Entity.class.getName())) {
+							ok = true;
+						}
+					}
+					if (!ok) {
+						Flag flag = new Flag(jcas);
+						flag.setKey(flagKey);
+						flag.setIcon(MaterialDesign.MDI_FLAG.name());
+						flag.setTargetClass(Entity.class.getName());
+						flag.setLabel(flagKey);
+						flag.addToIndexes();
+						flags.add(flag);
+					}
+				}
+		}
+
+		for (Mention mention : JCasUtil.select(jcas, Mention.class)) {
+			if (mention.getFlags() != null)
+				for (String flagKey : mention.getFlags()) {
+					boolean ok = false;
+					for (Flag flag : flags) {
+						if (flag.getKey().equalsIgnoreCase(flagKey)
+								&& flag.getTargetClass().equalsIgnoreCase(Mention.class.getName())) {
+							ok = true;
+						}
+					}
+					if (!ok) {
+						Flag flag = new Flag(jcas);
+						flag.setKey(flagKey);
+						flag.setIcon(MaterialDesign.MDI_FLAG.name());
+						flag.setTargetClass(Mention.class.getName());
+						flag.setLabel(flagKey);
+						flag.addToIndexes();
+						flags.add(flag);
+					}
+				}
+		}
+
+	}
+
+}

src/main/java/de/unistuttgart/ims/coref/annotator/worker/JCasLoader.java

@@ -28,6 +28,7 @@
 import de.unistuttgart.ims.coref.annotator.plugins.UimaImportPlugin;
 import de.unistuttgart.ims.coref.annotator.uima.EnsureMeta;
 import de.unistuttgart.ims.coref.annotator.uima.Fix131;
+import de.unistuttgart.ims.coref.annotator.uima.VerifyFlagObjects;
 import de.unistuttgart.ims.uimautil.SetJCasLanguage;
 
 public class JCasLoader extends SwingWorker<JCas, Object> {
@@ -108,6 +109,7 @@ private JCas readFile() throws IOException, UIMAException {
 						SetJCasLanguage.PARAM_LANGUAGE, getLanguage()));
 			b.add(flavor.getImporter());
 			b.add(AnalysisEngineFactory.createEngineDescription(Fix131.class));
+			b.add(AnalysisEngineFactory.createEngineDescription(VerifyFlagObjects.class));
 
 			SimplePipeline.runPipeline(jcas, b.createAggregateDescription());
 			return jcas;
@@ -120,6 +122,7 @@ private JCas readFile() throws IOException, UIMAException {
 						SetJCasLanguage.PARAM_LANGUAGE, getLanguage()));
 			b.add(flavor.getImporter());
 			b.add(AnalysisEngineFactory.createEngineDescription(Fix131.class));
+			b.add(AnalysisEngineFactory.createEngineDescription(VerifyFlagObjects.class));
 
 			iter = SimplePipeline.iteratePipeline(crd, b.createAggregateDescription()).iterator();
 			if (iter.hasNext()) {