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niaid/JoesFlow
Add kmeans clusters to downloaded output

Extend extract_values to pull kmeans identifiers when exporting data.
enhancement
  • johnsonra
  • 1
  • Opened 
    on Mar 22, 2023
  • #15

niaid/JoesFlow
Update testing to use shiny::runTests

- Replace existing tests with server function testing - Add general Snapshot-based tests See also this article.
bug
enhancement
  • johnsonra
  • 2
  • Opened 
    on Jan 3, 2023
  • #14

niaid/JoesFlow
Composition and Marker heat map plots break with too many groups

Related to issue #10
  • johnsonra
  • 1
  • Opened 
    on Dec 14, 2022
  • #13

niaid/JoesFlow
Fix tabular output for composition

Tabular output for composition is also broken (related to #11 ).
bug
  • johnsonra
  • 1
  • Opened 
    on Dec 14, 2022
  • #12

niaid/JoesFlow
Error on downloading pca loadings

Getting an error when trying to download PCA loadings: Error in table: all arguments must have the same length It is coming from somewhere in lines 615 - 705 of app_server.R in 1542de263104f4bfd101957a8efda66a74bd57c4 ...
bug
  • johnsonra
  • 1
  • Opened 
    on Dec 9, 2022
  • #11

niaid/JoesFlow
Too many labels

Quote from email: At some point, including IDs in the legend is not helpful and takes up space that would be better used to visualize the data (see attached images). Do you have thoughts on the maximum ...
bug
  • johnsonra
  • 1
  • Opened 
    on Dec 9, 2022
  • #10

niaid/JoesFlow
Too many groups

There is a bug stemming from too many levels in the grouping variable. I think it is coming from lines 90, 139, 158, 280, and 337 of utils.R (see 7bdaf70381d03cff415306a4e72fea7e4af9f199). Having all these ...
bug
  • johnsonra
  • 1
  • Opened 
    on Dec 6, 2022
  • #9

niaid/JoesFlow
Add random seed for reproducibility

enhancement
  • johnsonra
  • 1
  • Opened 
    on Dec 6, 2022
  • #8

niaid/JoesFlow
Check test data

Test data may be included with the Dockerfile, making it larger than it needs to be. Double check that it isn t being copied over.
bug
  • johnsonra
  • 2
  • Opened 
    on Nov 17, 2022
  • #7

niaid/JoesFlow
Use header

We are getting this warning with devtools::test() Warning (test-app.R:2:3): app loads Navigation containers expect a collection of bslib::nav()/shiny::tabPanel()s and/or bslib::nav_menu()/shiny::navbarMenu()s. ...
  • johnsonra
  • 1
  • Opened 
    on Nov 8, 2022
  • #6
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