.travis.yml

branches:
  only:
  - master

env:
  global:
  - RGL_USE_NULL=TRUE

language: r
sudo: required
cache: packages

warnings_are_errors: true
r_build_args: '--no-manual'
r_check_args: '--no-build-vignettes --no-manual'

r:
  - bioc-release
  - bioc-devel

before_install:
  - Rscript -e 'update.packages(ask = FALSE)'

r_packages:
  - devtools
  - covr
  - BiocManager

r_github_packages:
  - r-lib/devtools@2d012d1
  - r-lib/sessioninfo
  - jimhester/covr
  - tlverse/origami

bioc_packages:
  - S4Vectors
  - BiocStyle
  - BiocCheck
  - BiocParallel
  - SummarizedExperiment
  - airway

## coverage
after_success:
  - Rscript -e "covr::codecov(line_exclusions = list('R/utils.R', 'R/get_summary.R', 'R/data.R', 'R/bioadaptest.R'))"
  - R CMD BiocCheck .

notifications:
  email:
    on_success: change
    on_failure: change