From b2be28fd513f5fdf0e5197e90b6ca28090e51dbd Mon Sep 17 00:00:00 2001 From: Nils Homer Date: Wed, 8 May 2013 09:31:05 -0400 Subject: [PATCH] * adding samtools as a submodule --- .gitmodules | 3 +++ Makefile | 2 +- samtools | 1 + 3 files changed, 5 insertions(+), 1 deletion(-) create mode 100644 .gitmodules create mode 160000 samtools diff --git a/.gitmodules b/.gitmodules new file mode 100644 index 0000000..e37d154 --- /dev/null +++ b/.gitmodules @@ -0,0 +1,3 @@ +[submodule "samtools"] + path = samtools + url = http://github.com/samtools/samtools.git diff --git a/Makefile b/Makefile index 908a784..dccaa78 100644 --- a/Makefile +++ b/Makefile @@ -1,7 +1,7 @@ PACKAGE_VERSION="0.1.11" CC= gcc CFLAGS= -g -Wall -O3 #-m64 #-arch ppc -DFLAGS= -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DPACKAGE_VERSION=\\\"${PACKAGE_VERSION}\\\" +DFLAGS= -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\\\"${PACKAGE_VERSION}\\\" DWGSIM_AOBJS = src/dwgsim_opt.o src/mut.o src/contigs.o src/regions_bed.o \ src/mut_txt.o src/mut_bed.o src/mut_vcf.o src/mut_input.o src/dwgsim.o DWGSIM_EVAL_AOBJS = src/dwgsim_eval.o \ diff --git a/samtools b/samtools new file mode 160000 index 0000000..28391e5 --- /dev/null +++ b/samtools @@ -0,0 +1 @@ +Subproject commit 28391e5898804ce6b805016d8c676fdf61442eb3