* adding samtools as a submodule

nh13 · May 8, 2013 · b2be28f · b2be28f
1 parent 2cbc181
commit b2be28f
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Showing 3 changed files with 5 additions and 1 deletion.
diff --git a/.gitmodules b/.gitmodules
@@ -0,0 +1,3 @@
+[submodule "samtools"]
+	path = samtools
+	url = http://github.com/samtools/samtools.git
diff --git a/Makefile b/Makefile
@@ -1,7 +1,7 @@
 PACKAGE_VERSION="0.1.11"
 CC=			gcc
 CFLAGS=		-g -Wall -O3 #-m64 #-arch ppc
-DFLAGS=		-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DPACKAGE_VERSION=\\\"${PACKAGE_VERSION}\\\"
+DFLAGS=		-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION=\\\"${PACKAGE_VERSION}\\\"
 DWGSIM_AOBJS = src/dwgsim_opt.o src/mut.o src/contigs.o src/regions_bed.o \
 			   src/mut_txt.o src/mut_bed.o src/mut_vcf.o src/mut_input.o src/dwgsim.o
 DWGSIM_EVAL_AOBJS = src/dwgsim_eval.o \

diff --git a/samtools b/samtools