Skip to content

Commit

Permalink
Remove misplaced newline
Browse files Browse the repository at this point in the history
  • Loading branch information
fasterius committed Dec 20, 2023
1 parent fabdc22 commit 20bc7ef
Showing 1 changed file with 1 addition and 5 deletions.
6 changes: 1 addition & 5 deletions tests/pipeline/test_spaceranger_ffpe_v2_cytassist.nf.test
Original file line number Diff line number Diff line change
Expand Up @@ -29,9 +29,8 @@ nextflow_pipeline {
{ assert file("$outputDir/CytAssist_11mm_FFPE_Human_Glioblastoma_2/data/st_adata_raw.h5ad").exists() },

// Reports
{ assert
{ assert file("$outputDir/CytAssist_11mm_FFPE_Human_Glioblastoma_2/reports/st_qc_and_normalisation.html").text.contains("Distributions after filtering") },
file("$outputDir/CytAssist_11mm_FFPE_Human_Glioblastoma_2/reports/st_clustering.html").text.contains("AnnData object is saved in the") },
{ assert file("$outputDir/CytAssist_11mm_FFPE_Human_Glioblastoma_2/reports/st_clustering.html").text.contains("AnnData object is saved in the") },
{ assert file("$outputDir/CytAssist_11mm_FFPE_Human_Glioblastoma_2/reports/st_spatial_de.html").text.contains("Spatially variable genes") },

// DEGs
Expand All @@ -51,7 +50,4 @@ nextflow_pipeline {
)
}
}



}

0 comments on commit 20bc7ef

Please sign in to comment.