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Currently, CELLTYPE_ASSIGNMENT:CELLTYPES_CELLTYPIST fails for data other than from human:
Traceback (most recent call last): File ".command.sh", line 42, in <module> predictions = celltypist.annotate( ^^^^^^^^^^^^^^^^^^^^ File "/opt/conda/lib/python3.12/site-packages/celltypist/annotate.py", line 81, in annotate predictions = clf.celltype(mode = mode, p_thres = p_thres) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/opt/conda/lib/python3.12/site-packages/celltypist/classifier.py", line 355, in celltype raise ValueError( ValueError: 🛑 No features overlap with the model. Please provide gene symbols
However, Celltypist supports species conversion. See this issue for details.
There are many ways one can approach a fix two this:
The last provides more flexibility for users that train their own model.
The text was updated successfully, but these errors were encountered:
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Description of feature
Currently, CELLTYPE_ASSIGNMENT:CELLTYPES_CELLTYPIST fails for data other than from human:
However, Celltypist supports species conversion. See this issue for details.
There are many ways one can approach a fix two this:
The last provides more flexibility for users that train their own model.
The text was updated successfully, but these errors were encountered: