From 47c7cfc1e5786c72776ec09fa01f7dcd195f9e42 Mon Sep 17 00:00:00 2001 From: Shaun Regenbaum Date: Wed, 28 Aug 2024 14:11:05 +0300 Subject: [PATCH] reset proper paths for modlules --- modules/nf-core/{ => modules}/bcftools/annotate/environment.yml | 0 modules/nf-core/{ => modules}/bcftools/annotate/main.nf | 0 modules/nf-core/{ => modules}/bcftools/annotate/meta.yml | 0 modules/nf-core/{ => modules}/bcftools/annotate/tests/bcf.config | 0 .../nf-core/{ => modules}/bcftools/annotate/tests/main.nf.test | 0 .../{ => modules}/bcftools/annotate/tests/main.nf.test.snap | 0 modules/nf-core/{ => modules}/bcftools/annotate/tests/tags.yml | 0 modules/nf-core/{ => modules}/bcftools/annotate/tests/vcf.config | 0 modules/nf-core/{ => modules}/bcftools/concat/environment.yml | 0 modules/nf-core/{ => modules}/bcftools/concat/main.nf | 0 modules/nf-core/{ => modules}/bcftools/concat/meta.yml | 0 modules/nf-core/{ => modules}/bcftools/concat/tests/main.nf.test | 0 .../nf-core/{ => modules}/bcftools/concat/tests/main.nf.test.snap | 0 .../nf-core/{ => modules}/bcftools/concat/tests/nextflow.config | 0 modules/nf-core/{ => modules}/bcftools/concat/tests/tags.yml | 0 .../nf-core/{ => modules}/bcftools/pluginscatter/environment.yml | 0 modules/nf-core/{ => modules}/bcftools/pluginscatter/main.nf | 0 modules/nf-core/{ => modules}/bcftools/pluginscatter/meta.yml | 0 modules/nf-core/{ => modules}/bcftools/sort/environment.yml | 0 modules/nf-core/{ => modules}/bcftools/sort/main.nf | 0 modules/nf-core/{ => modules}/bcftools/sort/meta.yml | 0 modules/nf-core/{ => modules}/bcftools/sort/tests/main.nf.test | 0 .../nf-core/{ => modules}/bcftools/sort/tests/main.nf.test.snap | 0 modules/nf-core/{ => modules}/bcftools/sort/tests/tags.yml | 0 modules/nf-core/{ => modules}/bedtools/merge/environment.yml | 0 modules/nf-core/{ => modules}/bedtools/merge/main.nf | 0 modules/nf-core/{ => modules}/bedtools/merge/meta.yml | 0 modules/nf-core/{ => modules}/bedtools/merge/tests/main.nf.test | 0 .../nf-core/{ => modules}/bedtools/merge/tests/main.nf.test.snap | 0 .../nf-core/{ => modules}/bedtools/merge/tests/nextflow.config | 0 modules/nf-core/{ => modules}/bedtools/merge/tests/tags.yml | 0 modules/nf-core/{ => modules}/bedtools/sort/environment.yml | 0 modules/nf-core/{ => modules}/bedtools/sort/main.nf | 0 modules/nf-core/{ => modules}/bedtools/sort/meta.yml | 0 modules/nf-core/{ => modules}/bedtools/sort/tests/main.nf.test | 0 .../nf-core/{ => modules}/bedtools/sort/tests/main.nf.test.snap | 0 modules/nf-core/{ => modules}/bedtools/sort/tests/nextflow.config | 0 modules/nf-core/{ => modules}/bedtools/sort/tests/tags.yml | 0 modules/nf-core/{ => modules}/cat/fastq/environment.yml | 0 modules/nf-core/{ => modules}/cat/fastq/main.nf | 0 modules/nf-core/{ => modules}/cat/fastq/meta.yml | 0 modules/nf-core/{ => modules}/cat/fastq/tests/main.nf.test | 0 modules/nf-core/{ => modules}/cat/fastq/tests/main.nf.test.snap | 0 modules/nf-core/{ => modules}/cat/fastq/tests/tags.yml | 0 modules/nf-core/{ => modules}/ensemblvep/download/environment.yml | 0 modules/nf-core/{ => modules}/ensemblvep/download/main.nf | 0 modules/nf-core/{ => modules}/ensemblvep/download/meta.yml | 0 .../nf-core/{ => modules}/ensemblvep/download/tests/main.nf.test | 0 .../{ => modules}/ensemblvep/download/tests/main.nf.test.snap | 0 .../{ => modules}/ensemblvep/download/tests/nextflow.config | 0 modules/nf-core/{ => modules}/ensemblvep/download/tests/tags.yml | 0 modules/nf-core/{ => modules}/ensemblvep/vep/environment.yml | 0 modules/nf-core/{ => modules}/ensemblvep/vep/main.nf | 0 modules/nf-core/{ => modules}/ensemblvep/vep/meta.yml | 0 modules/nf-core/{ => modules}/ensemblvep/vep/tests/main.nf.test | 0 .../nf-core/{ => modules}/ensemblvep/vep/tests/main.nf.test.snap | 0 .../nf-core/{ => modules}/ensemblvep/vep/tests/nextflow.config | 0 modules/nf-core/{ => modules}/ensemblvep/vep/tests/tab.gz.config | 0 modules/nf-core/{ => modules}/ensemblvep/vep/tests/tags.yml | 0 modules/nf-core/{ => modules}/ensemblvep/vep/tests/vcf.config | 0 modules/nf-core/{ => modules}/fastqc/environment.yml | 0 modules/nf-core/{ => modules}/fastqc/main.nf | 0 modules/nf-core/{ => modules}/fastqc/meta.yml | 0 modules/nf-core/{ => modules}/fastqc/tests/main.nf.test | 0 modules/nf-core/{ => modules}/fastqc/tests/main.nf.test.snap | 0 modules/nf-core/{ => modules}/fastqc/tests/tags.yml | 0 modules/nf-core/{ => modules}/gatk4/applybqsr/environment.yml | 0 modules/nf-core/{ => modules}/gatk4/applybqsr/main.nf | 0 modules/nf-core/{ => modules}/gatk4/applybqsr/meta.yml | 0 modules/nf-core/{ => modules}/gatk4/applybqsr/tests/main.nf.test | 0 .../nf-core/{ => modules}/gatk4/applybqsr/tests/main.nf.test.snap | 0 modules/nf-core/{ => modules}/gatk4/applybqsr/tests/tags.yml | 0 .../nf-core/{ => modules}/gatk4/baserecalibrator/environment.yml | 0 modules/nf-core/{ => modules}/gatk4/baserecalibrator/main.nf | 0 modules/nf-core/{ => modules}/gatk4/baserecalibrator/meta.yml | 0 .../{ => modules}/gatk4/baserecalibrator/tests/main.nf.test | 0 .../{ => modules}/gatk4/baserecalibrator/tests/main.nf.test.snap | 0 .../nf-core/{ => modules}/gatk4/baserecalibrator/tests/tags.yml | 0 .../nf-core/{ => modules}/gatk4/bedtointervallist/environment.yml | 0 modules/nf-core/{ => modules}/gatk4/bedtointervallist/main.nf | 0 modules/nf-core/{ => modules}/gatk4/bedtointervallist/meta.yml | 0 .../{ => modules}/gatk4/bedtointervallist/tests/main.nf.test | 0 .../{ => modules}/gatk4/bedtointervallist/tests/main.nf.test.snap | 0 .../nf-core/{ => modules}/gatk4/bedtointervallist/tests/tags.yml | 0 modules/nf-core/{ => modules}/gatk4/combinegvcfs/environment.yml | 0 modules/nf-core/{ => modules}/gatk4/combinegvcfs/main.nf | 0 modules/nf-core/{ => modules}/gatk4/combinegvcfs/meta.yml | 0 .../nf-core/{ => modules}/gatk4/combinegvcfs/tests/main.nf.test | 0 .../{ => modules}/gatk4/combinegvcfs/tests/main.nf.test.snap | 0 modules/nf-core/{ => modules}/gatk4/combinegvcfs/tests/tags.yml | 0 .../{ => modules}/gatk4/createsequencedictionary/environment.yml | 0 .../nf-core/{ => modules}/gatk4/createsequencedictionary/main.nf | 0 .../nf-core/{ => modules}/gatk4/createsequencedictionary/meta.yml | 0 .../gatk4/createsequencedictionary/tests/main.nf.test | 0 .../gatk4/createsequencedictionary/tests/main.nf.test.snap | 0 .../{ => modules}/gatk4/createsequencedictionary/tests/tags.yml | 0 .../nf-core/{ => modules}/gatk4/haplotypecaller/environment.yml | 0 modules/nf-core/{ => modules}/gatk4/haplotypecaller/main.nf | 0 modules/nf-core/{ => modules}/gatk4/haplotypecaller/meta.yml | 0 .../{ => modules}/gatk4/haplotypecaller/tests/main.nf.test | 0 .../{ => modules}/gatk4/haplotypecaller/tests/main.nf.test.snap | 0 .../nf-core/{ => modules}/gatk4/haplotypecaller/tests/tags.yml | 0 .../nf-core/{ => modules}/gatk4/indexfeaturefile/environment.yml | 0 modules/nf-core/{ => modules}/gatk4/indexfeaturefile/main.nf | 0 modules/nf-core/{ => modules}/gatk4/indexfeaturefile/meta.yml | 0 .../{ => modules}/gatk4/indexfeaturefile/tests/main.nf.test | 0 .../{ => modules}/gatk4/indexfeaturefile/tests/main.nf.test.snap | 0 .../nf-core/{ => modules}/gatk4/indexfeaturefile/tests/tags.yml | 0 .../nf-core/{ => modules}/gatk4/intervallisttools/environment.yml | 0 modules/nf-core/{ => modules}/gatk4/intervallisttools/main.nf | 0 modules/nf-core/{ => modules}/gatk4/intervallisttools/meta.yml | 0 .../{ => modules}/gatk4/intervallisttools/tests/main.nf.test | 0 .../{ => modules}/gatk4/intervallisttools/tests/main.nf.test.snap | 0 .../{ => modules}/gatk4/intervallisttools/tests/nextflow.config | 0 .../nf-core/{ => modules}/gatk4/intervallisttools/tests/tags.yml | 0 modules/nf-core/{ => modules}/gatk4/mergevcfs/environment.yml | 0 modules/nf-core/{ => modules}/gatk4/mergevcfs/main.nf | 0 modules/nf-core/{ => modules}/gatk4/mergevcfs/meta.yml | 0 modules/nf-core/{ => modules}/gatk4/mergevcfs/tests/main.nf.test | 0 .../nf-core/{ => modules}/gatk4/mergevcfs/tests/main.nf.test.snap | 0 modules/nf-core/{ => modules}/gatk4/mergevcfs/tests/tags.yml | 0 .../nf-core/{ => modules}/gatk4/splitncigarreads/environment.yml | 0 modules/nf-core/{ => modules}/gatk4/splitncigarreads/main.nf | 0 modules/nf-core/{ => modules}/gatk4/splitncigarreads/meta.yml | 0 .../{ => modules}/gatk4/splitncigarreads/tests/main.nf.test | 0 .../{ => modules}/gatk4/splitncigarreads/tests/main.nf.test.snap | 0 .../nf-core/{ => modules}/gatk4/splitncigarreads/tests/tags.yml | 0 .../nf-core/{ => modules}/gatk4/variantfiltration/environment.yml | 0 modules/nf-core/{ => modules}/gatk4/variantfiltration/main.nf | 0 modules/nf-core/{ => modules}/gatk4/variantfiltration/meta.yml | 0 .../{ => modules}/gatk4/variantfiltration/tests/main.nf.test | 0 .../{ => modules}/gatk4/variantfiltration/tests/main.nf.test.snap | 0 .../nf-core/{ => modules}/gatk4/variantfiltration/tests/tags.yml | 0 modules/nf-core/{ => modules}/gffread/environment.yml | 0 modules/nf-core/{ => modules}/gffread/main.nf | 0 modules/nf-core/{ => modules}/gffread/meta.yml | 0 modules/nf-core/{ => modules}/gffread/tests/main.nf.test | 0 modules/nf-core/{ => modules}/gffread/tests/main.nf.test.snap | 0 modules/nf-core/{ => modules}/gffread/tests/nextflow-fasta.config | 0 modules/nf-core/{ => modules}/gffread/tests/nextflow-gff3.config | 0 modules/nf-core/{ => modules}/gffread/tests/nextflow.config | 0 modules/nf-core/{ => modules}/gffread/tests/tags.yml | 0 modules/nf-core/{ => modules}/gunzip/environment.yml | 0 modules/nf-core/{ => modules}/gunzip/main.nf | 0 modules/nf-core/{ => modules}/gunzip/meta.yml | 0 modules/nf-core/{ => modules}/gunzip/tests/main.nf.test | 0 modules/nf-core/{ => modules}/gunzip/tests/main.nf.test.snap | 0 modules/nf-core/{ => modules}/gunzip/tests/tags.yml | 0 modules/nf-core/{ => modules}/mosdepth/environment.yml | 0 modules/nf-core/{ => modules}/mosdepth/main.nf | 0 modules/nf-core/{ => modules}/mosdepth/meta.yml | 0 modules/nf-core/{ => modules}/mosdepth/tests/main.nf.test | 0 modules/nf-core/{ => modules}/mosdepth/tests/main.nf.test.snap | 0 modules/nf-core/{ => modules}/mosdepth/tests/quantized.config | 0 modules/nf-core/{ => modules}/mosdepth/tests/tags.yml | 0 modules/nf-core/{ => modules}/mosdepth/tests/threshold.config | 0 modules/nf-core/{ => modules}/mosdepth/tests/window.config | 0 modules/nf-core/{ => modules}/multiqc/environment.yml | 0 modules/nf-core/{ => modules}/multiqc/main.nf | 0 modules/nf-core/{ => modules}/multiqc/meta.yml | 0 modules/nf-core/{ => modules}/multiqc/tests/main.nf.test | 0 modules/nf-core/{ => modules}/multiqc/tests/main.nf.test.snap | 0 modules/nf-core/{ => modules}/multiqc/tests/tags.yml | 0 .../nf-core/{ => modules}/picard/markduplicates/environment.yml | 0 modules/nf-core/{ => modules}/picard/markduplicates/main.nf | 0 modules/nf-core/{ => modules}/picard/markduplicates/meta.yml | 0 .../{ => modules}/picard/markduplicates/tests/main.nf.test | 0 .../{ => modules}/picard/markduplicates/tests/main.nf.test.snap | 0 .../{ => modules}/picard/markduplicates/tests/nextflow.config | 0 .../nf-core/{ => modules}/picard/markduplicates/tests/tags.yml | 0 modules/nf-core/{ => modules}/samtools/faidx/environment.yml | 0 modules/nf-core/{ => modules}/samtools/faidx/main.nf | 0 modules/nf-core/{ => modules}/samtools/faidx/meta.yml | 0 modules/nf-core/{ => modules}/samtools/faidx/tests/main.nf.test | 0 .../nf-core/{ => modules}/samtools/faidx/tests/main.nf.test.snap | 0 .../nf-core/{ => modules}/samtools/faidx/tests/nextflow.config | 0 .../nf-core/{ => modules}/samtools/faidx/tests/nextflow2.config | 0 modules/nf-core/{ => modules}/samtools/faidx/tests/tags.yml | 0 modules/nf-core/{ => modules}/samtools/flagstat/environment.yml | 0 modules/nf-core/{ => modules}/samtools/flagstat/main.nf | 0 modules/nf-core/{ => modules}/samtools/flagstat/meta.yml | 0 .../nf-core/{ => modules}/samtools/flagstat/tests/main.nf.test | 0 .../{ => modules}/samtools/flagstat/tests/main.nf.test.snap | 0 modules/nf-core/{ => modules}/samtools/flagstat/tests/tags.yml | 0 modules/nf-core/{ => modules}/samtools/idxstats/environment.yml | 0 modules/nf-core/{ => modules}/samtools/idxstats/main.nf | 0 modules/nf-core/{ => modules}/samtools/idxstats/meta.yml | 0 .../nf-core/{ => modules}/samtools/idxstats/tests/main.nf.test | 0 .../{ => modules}/samtools/idxstats/tests/main.nf.test.snap | 0 modules/nf-core/{ => modules}/samtools/idxstats/tests/tags.yml | 0 modules/nf-core/{ => modules}/samtools/index/environment.yml | 0 modules/nf-core/{ => modules}/samtools/index/main.nf | 0 modules/nf-core/{ => modules}/samtools/index/meta.yml | 0 .../{ => modules}/samtools/index/tests/csi.nextflow.config | 0 modules/nf-core/{ => modules}/samtools/index/tests/main.nf.test | 0 .../nf-core/{ => modules}/samtools/index/tests/main.nf.test.snap | 0 modules/nf-core/{ => modules}/samtools/index/tests/tags.yml | 0 modules/nf-core/{ => modules}/samtools/merge/environment.yml | 0 modules/nf-core/{ => modules}/samtools/merge/main.nf | 0 modules/nf-core/{ => modules}/samtools/merge/meta.yml | 0 modules/nf-core/{ => modules}/samtools/merge/tests/index.config | 0 modules/nf-core/{ => modules}/samtools/merge/tests/main.nf.test | 0 .../nf-core/{ => modules}/samtools/merge/tests/main.nf.test.snap | 0 modules/nf-core/{ => modules}/samtools/merge/tests/tags.yml | 0 modules/nf-core/{ => modules}/samtools/sort/environment.yml | 0 modules/nf-core/{ => modules}/samtools/sort/main.nf | 0 modules/nf-core/{ => modules}/samtools/sort/meta.yml | 0 modules/nf-core/{ => modules}/samtools/sort/tests/main.nf.test | 0 .../nf-core/{ => modules}/samtools/sort/tests/main.nf.test.snap | 0 modules/nf-core/{ => modules}/samtools/sort/tests/nextflow.config | 0 modules/nf-core/{ => modules}/samtools/sort/tests/tags.yml | 0 modules/nf-core/{ => modules}/samtools/stats/environment.yml | 0 modules/nf-core/{ => modules}/samtools/stats/main.nf | 0 modules/nf-core/{ => modules}/samtools/stats/meta.yml | 0 modules/nf-core/{ => modules}/samtools/stats/tests/main.nf.test | 0 .../nf-core/{ => modules}/samtools/stats/tests/main.nf.test.snap | 0 modules/nf-core/{ => modules}/samtools/stats/tests/tags.yml | 0 modules/nf-core/{ => modules}/snpeff/download/environment.yml | 0 modules/nf-core/{ => modules}/snpeff/download/main.nf | 0 modules/nf-core/{ => modules}/snpeff/download/meta.yml | 0 modules/nf-core/{ => modules}/snpeff/snpeff/environment.yml | 0 modules/nf-core/{ => modules}/snpeff/snpeff/main.nf | 0 modules/nf-core/{ => modules}/snpeff/snpeff/meta.yml | 0 modules/nf-core/{ => modules}/snpeff/snpeff/tests/main.nf.test | 0 .../nf-core/{ => modules}/snpeff/snpeff/tests/main.nf.test.snap | 0 modules/nf-core/{ => modules}/snpeff/snpeff/tests/nextflow.config | 0 modules/nf-core/{ => modules}/snpeff/snpeff/tests/tags.yml | 0 modules/nf-core/{ => modules}/star/align/environment.yml | 0 modules/nf-core/{ => modules}/star/align/main.nf | 0 modules/nf-core/{ => modules}/star/align/meta.yml | 0 modules/nf-core/{ => modules}/star/align/tests/main.nf.test | 0 modules/nf-core/{ => modules}/star/align/tests/main.nf.test.snap | 0 .../nf-core/{ => modules}/star/align/tests/nextflow.arriba.config | 0 modules/nf-core/{ => modules}/star/align/tests/nextflow.config | 0 .../{ => modules}/star/align/tests/nextflow.starfusion.config | 0 modules/nf-core/{ => modules}/star/align/tests/tags.yml | 0 modules/nf-core/{ => modules}/star/genomegenerate/environment.yml | 0 modules/nf-core/{ => modules}/star/genomegenerate/main.nf | 0 modules/nf-core/{ => modules}/star/genomegenerate/meta.yml | 0 .../nf-core/{ => modules}/star/genomegenerate/tests/main.nf.test | 0 .../{ => modules}/star/genomegenerate/tests/main.nf.test.snap | 0 modules/nf-core/{ => modules}/star/genomegenerate/tests/tags.yml | 0 modules/nf-core/{ => modules}/tabix/bgziptabix/environment.yml | 0 modules/nf-core/{ => modules}/tabix/bgziptabix/main.nf | 0 modules/nf-core/{ => modules}/tabix/bgziptabix/meta.yml | 0 modules/nf-core/{ => modules}/tabix/bgziptabix/tests/main.nf.test | 0 .../{ => modules}/tabix/bgziptabix/tests/main.nf.test.snap | 0 .../nf-core/{ => modules}/tabix/bgziptabix/tests/tabix_csi.config | 0 .../nf-core/{ => modules}/tabix/bgziptabix/tests/tabix_tbi.config | 0 modules/nf-core/{ => modules}/tabix/bgziptabix/tests/tags.yml | 0 modules/nf-core/{ => modules}/tabix/tabix/environment.yml | 0 modules/nf-core/{ => modules}/tabix/tabix/main.nf | 0 modules/nf-core/{ => modules}/tabix/tabix/meta.yml | 0 modules/nf-core/{ => modules}/tabix/tabix/tests/main.nf.test | 0 modules/nf-core/{ => modules}/tabix/tabix/tests/main.nf.test.snap | 0 modules/nf-core/{ => modules}/tabix/tabix/tests/tabix_bed.config | 0 modules/nf-core/{ => modules}/tabix/tabix/tests/tabix_gff.config | 0 .../nf-core/{ => modules}/tabix/tabix/tests/tabix_vcf_csi.config | 0 .../nf-core/{ => modules}/tabix/tabix/tests/tabix_vcf_tbi.config | 0 modules/nf-core/{ => modules}/tabix/tabix/tests/tags.yml | 0 modules/nf-core/{ => modules}/untar/environment.yml | 0 modules/nf-core/{ => modules}/untar/main.nf | 0 modules/nf-core/{ => modules}/untar/meta.yml | 0 modules/nf-core/{ => modules}/untar/tests/main.nf.test | 0 modules/nf-core/{ => modules}/untar/tests/main.nf.test.snap | 0 modules/nf-core/{ => modules}/untar/tests/tags.yml | 0 266 files changed, 0 insertions(+), 0 deletions(-) rename modules/nf-core/{ => modules}/bcftools/annotate/environment.yml (100%) rename modules/nf-core/{ => modules}/bcftools/annotate/main.nf (100%) rename modules/nf-core/{ => modules}/bcftools/annotate/meta.yml (100%) rename modules/nf-core/{ => modules}/bcftools/annotate/tests/bcf.config (100%) rename modules/nf-core/{ => modules}/bcftools/annotate/tests/main.nf.test (100%) rename modules/nf-core/{ => modules}/bcftools/annotate/tests/main.nf.test.snap (100%) rename modules/nf-core/{ => modules}/bcftools/annotate/tests/tags.yml (100%) rename modules/nf-core/{ => modules}/bcftools/annotate/tests/vcf.config (100%) rename modules/nf-core/{ => modules}/bcftools/concat/environment.yml (100%) rename modules/nf-core/{ => modules}/bcftools/concat/main.nf (100%) rename modules/nf-core/{ => modules}/bcftools/concat/meta.yml (100%) rename modules/nf-core/{ => modules}/bcftools/concat/tests/main.nf.test (100%) rename modules/nf-core/{ => modules}/bcftools/concat/tests/main.nf.test.snap (100%) rename modules/nf-core/{ => modules}/bcftools/concat/tests/nextflow.config (100%) rename modules/nf-core/{ => modules}/bcftools/concat/tests/tags.yml (100%) rename modules/nf-core/{ => modules}/bcftools/pluginscatter/environment.yml (100%) rename modules/nf-core/{ => modules}/bcftools/pluginscatter/main.nf (100%) rename modules/nf-core/{ => modules}/bcftools/pluginscatter/meta.yml (100%) rename modules/nf-core/{ => modules}/bcftools/sort/environment.yml (100%) rename modules/nf-core/{ => modules}/bcftools/sort/main.nf (100%) rename modules/nf-core/{ => modules}/bcftools/sort/meta.yml (100%) rename modules/nf-core/{ => modules}/bcftools/sort/tests/main.nf.test (100%) rename modules/nf-core/{ => modules}/bcftools/sort/tests/main.nf.test.snap (100%) rename modules/nf-core/{ => modules}/bcftools/sort/tests/tags.yml (100%) rename modules/nf-core/{ => modules}/bedtools/merge/environment.yml (100%) rename modules/nf-core/{ => modules}/bedtools/merge/main.nf (100%) rename modules/nf-core/{ => modules}/bedtools/merge/meta.yml (100%) rename modules/nf-core/{ => modules}/bedtools/merge/tests/main.nf.test (100%) rename modules/nf-core/{ => modules}/bedtools/merge/tests/main.nf.test.snap (100%) rename modules/nf-core/{ => modules}/bedtools/merge/tests/nextflow.config (100%) rename modules/nf-core/{ => modules}/bedtools/merge/tests/tags.yml (100%) rename modules/nf-core/{ => modules}/bedtools/sort/environment.yml (100%) rename modules/nf-core/{ => modules}/bedtools/sort/main.nf (100%) rename modules/nf-core/{ => modules}/bedtools/sort/meta.yml (100%) rename modules/nf-core/{ => modules}/bedtools/sort/tests/main.nf.test (100%) rename modules/nf-core/{ => modules}/bedtools/sort/tests/main.nf.test.snap (100%) rename modules/nf-core/{ => modules}/bedtools/sort/tests/nextflow.config (100%) rename modules/nf-core/{ => modules}/bedtools/sort/tests/tags.yml (100%) rename modules/nf-core/{ => modules}/cat/fastq/environment.yml (100%) rename modules/nf-core/{ => modules}/cat/fastq/main.nf (100%) rename modules/nf-core/{ => modules}/cat/fastq/meta.yml (100%) rename modules/nf-core/{ => modules}/cat/fastq/tests/main.nf.test (100%) rename modules/nf-core/{ => modules}/cat/fastq/tests/main.nf.test.snap (100%) rename modules/nf-core/{ => modules}/cat/fastq/tests/tags.yml (100%) rename modules/nf-core/{ => modules}/ensemblvep/download/environment.yml (100%) rename modules/nf-core/{ => modules}/ensemblvep/download/main.nf (100%) rename modules/nf-core/{ => modules}/ensemblvep/download/meta.yml (100%) rename modules/nf-core/{ => 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