update test tags

nf-core · Jun 26, 2023 · 31a9d62 · 31a9d62
1 parent 537de07
commit 31a9d62
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diff --git a/tests/pipeline/star_salmon_skip/star_salmon.nf.test b/tests/pipeline/star_salmon_skip/star_salmon.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "main.nf"
     tag "star_salmon"
+    tag "star_salmon_skip"
     tag "pipeline"
 
     test("STAR Salmon (GSE110004)") {

diff --git a/tests/pipeline/star_salmon_skip/star_salmon_skip_featurecounts_group_type.nf.test b/tests/pipeline/star_salmon_skip/star_salmon_skip_featurecounts_group_type.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "main.nf"
     tag "star_salmon"
+    tag "star_salmon_skip"
     tag "pipeline"
 
     test("STAR Salmon (Skip FeatureCounts Group Type) (GSE110004)") {

diff --git a/tests/pipeline/star_salmon_skip/star_salmon_skip_index.nf.test b/tests/pipeline/star_salmon_skip/star_salmon_skip_index.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "main.nf"
     tag "star_salmon"
+    tag "star_salmon_skip"
     tag "pipeline"
 
     test("STAR Salmon (Skip STAR Index) (GSE110004)") {

diff --git a/tests/pipeline/star_salmon_skip/star_salmon_skip_qc.nf.test b/tests/pipeline/star_salmon_skip/star_salmon_skip_qc.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "main.nf"
     tag "star_salmon"
+    tag "star_salmon_skip"
     tag "pipeline"
 
     test("STAR Salmon (Skip QC) (GSE110004)") {

diff --git a/tests/pipeline/star_salmon_skip/star_salmon_skip_transcript_fasta.nf.test b/tests/pipeline/star_salmon_skip/star_salmon_skip_transcript_fasta.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "main.nf"
     tag "star_salmon"
+    tag "star_salmon_skip"
     tag "pipeline"
 
     test("STAR Salmon (Skip Transcript Fasta) (GSE110004)") {

diff --git a/tests/pipeline/star_salmon_skip/star_salmon_skip_trimming.nf.test b/tests/pipeline/star_salmon_skip/star_salmon_skip_trimming.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "main.nf"
     tag "star_salmon"
+    tag "star_salmon_skip"
     tag "pipeline"
 
     test("STAR Salmon (Skip Trimming) (GSE110004)") {

diff --git a/tests/pipeline/star_salmon_skip/star_salmon_trimmer_fastp.nf.test b/tests/pipeline/star_salmon_skip/star_salmon_trimmer_fastp.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "main.nf"
     tag "star_salmon"
+    tag "star_salmon_skip"
     tag "pipeline"
 
     test("STAR Salmon (Trimmer Fastp) (GSE110004)") {

diff --git a/tests/pipeline/star_salmon_with/star_salmon_with_bam_csi_index.nf.test b/tests/pipeline/star_salmon_with/star_salmon_with_bam_csi_index.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "main.nf"
     tag "star_salmon"
+    tag "star_salmon_with"
     tag "pipeline"
 
     test("STAR Salmon (CSI index for BAM files) (GSE110004)") {

diff --git a/tests/pipeline/star_salmon_with/star_salmon_with_min_mapped_reads_152.nf.test b/tests/pipeline/star_salmon_with/star_salmon_with_min_mapped_reads_152.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "main.nf"
     tag "star_salmon"
+    tag "star_salmon_with"
     tag "pipeline"
 
     test("STAR Salmon (Min Mapped Reads 152) (GSE110004)") {

diff --git a/tests/pipeline/star_salmon_with/star_salmon_with_min_mapped_reads_90.nf.test b/tests/pipeline/star_salmon_with/star_salmon_with_min_mapped_reads_90.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "main.nf"
     tag "star_salmon"
+    tag "star_salmon_with"
     tag "pipeline"
 
     test("STAR Salmon (Min Mapped Reads 90) (GSE110004)") {

diff --git a/tests/pipeline/star_salmon_with/star_salmon_with_remove_riborna_skip_qualimap.nf.test b/tests/pipeline/star_salmon_with/star_salmon_with_remove_riborna_skip_qualimap.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "main.nf"
     tag "star_salmon"
+    tag "star_salmon_with"
     tag "pipeline"
 
     test("STAR Salmon (Remove Ribo RNA & Skip Qualimap) (GSE110004)") {

diff --git a/tests/pipeline/star_salmon_with/star_salmon_with_save_align_intermeds_reference.nf.test b/tests/pipeline/star_salmon_with/star_salmon_with_save_align_intermeds_reference.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "main.nf"
     tag "star_salmon"
+    tag "star_salmon_with"
     tag "pipeline"
 
     test("STAR Salmon (Save Alignment Intermediate BAM & Reference) (GSE110004)") {

diff --git a/tests/pipeline/star_salmon_with/star_salmon_with_umi.nf.test b/tests/pipeline/star_salmon_with/star_salmon_with_umi.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "main.nf"
     tag "star_salmon"
+    tag "star_salmon_with"
     tag "pipeline"
 
     test("STAR Salmon (With UMI) (GSE110004)") {

diff --git a/tests/pipeline/star_salmon_with/star_salmon_with_umi_skip_trimming.nf.test b/tests/pipeline/star_salmon_with/star_salmon_with_umi_skip_trimming.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test Workflow main.nf"
     script "main.nf"
     tag "star_salmon"
+    tag "star_salmon_with"
     tag "pipeline"
 
     test("STAR Salmon (With UMI Skip Trimming) (GSE110004)") {