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@luisas
luisas committed Dec 18, 2024
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134 changes: 34 additions & 100 deletions modules.json
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Original file line number Diff line number Diff line change
Expand Up @@ -8,216 +8,156 @@
"clustalo/align": {
"branch": "master",
"git_sha": "7b32b09fe7787c0fc6924e7b6f223a0b1daf0d2f",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"clustalo/guidetree": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"csvtk/concat": {
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"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
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"modules"
]
"installed_by": ["modules"]
},
"csvtk/join": {
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"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": [
"modules"
],
"installed_by": ["modules"],
"patch": "modules/nf-core/csvtk/join/csvtk-join.diff"
},
"famsa/align": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
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"modules"
]
"installed_by": ["modules"]
},
"famsa/guidetree": {
"branch": "master",
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]
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},
"fastavalidator": {
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]
"installed_by": ["modules"]
},
"foldmason/createdb": {
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"foldmason/easymsa": {
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],
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"patch": "modules/nf-core/foldmason/easymsa/foldmason-easymsa.diff"
},
"foldmason/msa2lddtreport": {
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"kalign/align": {
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"patch": "modules/nf-core/kalign/align/kalign-align.diff"
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"learnmsa/align": {
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"magus/align": {
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"tcoffee/align": {
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"tcoffee/consensus": {
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"tcoffee/extractfrompdb": {
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"patch": "modules/nf-core/tcoffee/extractfrompdb/tcoffee-extractfrompdb.diff"
},
"tcoffee/irmsd": {
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"tcoffee/regressive": {
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"git_sha": "66b22564bc1bc0db7292f2073cdef954ead773e7",
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},
"tcoffee/seqreformat": {
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},
"tcoffee/tcs": {
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"untar": {
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"upp/align": {
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]
"installed_by": ["modules"]
}
}
},
Expand All @@ -226,26 +166,20 @@
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "c2b22d85f30a706a3073387f30380704fcae013b",
"installed_by": [
"subworkflows"
]
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "51ae5406a030d4da1e49e4dab49756844fdd6c7a",
"installed_by": [
"subworkflows"
]
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "2fd2cd6d0e7b273747f32e465fdc6bcc3ae0814e",
"installed_by": [
"subworkflows"
]
"installed_by": ["subworkflows"]
}
}
}
}
}
}
}
1 change: 0 additions & 1 deletion subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -139,7 +139,6 @@ workflow PIPELINE_COMPLETION {
def summary_file = "${outdir}/summary/complete_summary_stats_eval.csv"
def summary_file_with_traces = "${outdir}/summary/complete_summary_stats_eval_times.csv"
def trace_dir_path = "${outdir}/pipeline_info/"

if (shiny_trace_mode) {
merge_summary_and_traces(summary_file, trace_dir_path, summary_file_with_traces, "${shiny_dir_path}/complete_summary_stats_eval_times.csv")
}else{
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