From 970b3129a9caeebdf122c8daed5399c400155eef Mon Sep 17 00:00:00 2001 From: JoseEspinosa Date: Fri, 4 Oct 2024 10:56:21 +0200 Subject: [PATCH 1/2] Add Zenodo DOI --- README.md | 5 ++--- nextflow.config | 2 +- 2 files changed, 3 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index ba258608..13f0680b 100644 --- a/README.md +++ b/README.md @@ -6,7 +6,7 @@ [![GitHub Actions CI Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/ci.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/ci.yml) -[![GitHub Actions Linting Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/multiplesequencealign/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX) +[![GitHub Actions Linting Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/multiplesequencealign/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.13889386-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.13889386) [![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com) [![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A524.04.1-23aa62.svg)](https://www.nextflow.io/) @@ -125,8 +125,7 @@ For further information or help, don't hesitate to get in touch on the [Slack `# ## Citations - - +If you use nf-core/multiplesequencealign for your analysis, please cite it using the following doi: [10.5281/zenodo.13889386](https://doi.org/10.5281/zenodo.13889386) An extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file. diff --git a/nextflow.config b/nextflow.config index 616482c7..ff8ba10a 100644 --- a/nextflow.config +++ b/nextflow.config @@ -261,7 +261,7 @@ manifest { mainScript = 'main.nf' nextflowVersion = '!>=24.04.1' version = '1.0.0' - doi = '' + doi = 'https://doi.org/10.5281/zenodo.13889386' } // Load modules.config for DSL2 module specific options From f0dbfe2c15cab707ee3f32d9c42750c1eed34b09 Mon Sep 17 00:00:00 2001 From: JoseEspinosa Date: Fri, 4 Oct 2024 11:12:48 +0200 Subject: [PATCH 2/2] Bump dev version --- assets/multiqc_config.yml | 4 ++-- nextflow.config | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml index 6029e88f..98965b3c 100644 --- a/assets/multiqc_config.yml +++ b/assets/multiqc_config.yml @@ -1,7 +1,7 @@ report_comment: > - This report has been generated by the nf-core/multiplesequencealign + This report has been generated by the nf-core/multiplesequencealign analysis pipeline. For information about how to interpret these results, please see the - documentation. + documentation. report_section_order: "nf-core-multiplesequencealign-methods-description": order: -1000 diff --git a/nextflow.config b/nextflow.config index ff8ba10a..dfb6d8bd 100644 --- a/nextflow.config +++ b/nextflow.config @@ -260,7 +260,7 @@ manifest { description = """Pipeline to run and benchmark multiple sequence alignment tools.""" mainScript = 'main.nf' nextflowVersion = '!>=24.04.1' - version = '1.0.0' + version = '1.1.0dev' doi = 'https://doi.org/10.5281/zenodo.13889386' }