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@luisas
luisas committed Nov 26, 2024
1 parent 3b6ff65 commit 46dcc9d
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118 changes: 30 additions & 88 deletions modules.json
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Original file line number Diff line number Diff line change
Expand Up @@ -8,186 +8,134 @@
"clustalo/align": {
"branch": "master",
"git_sha": "2a8530b890878747f5063a894bad9fb2abd5c071",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"clustalo/guidetree": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"csvtk/concat": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"csvtk/join": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": [
"modules"
],
"installed_by": ["modules"],
"patch": "modules/nf-core/csvtk/join/csvtk-join.diff"
},
"famsa/align": {
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"modules"
]
"installed_by": ["modules"]
},
"famsa/guidetree": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
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]
"installed_by": ["modules"]
},
"foldmason/easymsa": {
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"modules"
]
"installed_by": ["modules"]
},
"kalign/align": {
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"git_sha": "cadb9bbfe56001ac421e0ee87808b0ccc754593a",
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"modules"
],
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"patch": "modules/nf-core/kalign/align/kalign-align.diff"
},
"learnmsa/align": {
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]
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},
"magus/align": {
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},
"mtmalign/align": {
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"installed_by": ["modules"]
},
"multiqc": {
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"git_sha": "cf17ca47590cc578dfb47db1c2a44ef86f89976d",
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"installed_by": ["modules"]
},
"muscle5/super5": {
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"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
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]
"installed_by": ["modules"]
},
"pigz/compress": {
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},
"pigz/uncompress": {
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"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
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]
"installed_by": ["modules"]
},
"tcoffee/align": {
"branch": "master",
"git_sha": "66b22564bc1bc0db7292f2073cdef954ead773e7",
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]
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},
"tcoffee/alncompare": {
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},
"tcoffee/consensus": {
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"git_sha": "023e51187884ea6cc7290767486f551565f1b77a",
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},
"tcoffee/irmsd": {
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},
"tcoffee/regressive": {
"branch": "master",
"git_sha": "66b22564bc1bc0db7292f2073cdef954ead773e7",
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},
"tcoffee/seqreformat": {
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"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
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},
"tcoffee/tcs": {
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"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
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},
"untar": {
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"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
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"upp/align": {
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"installed_by": [
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]
"installed_by": ["modules"]
}
}
},
Expand All @@ -196,26 +144,20 @@
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "c2b22d85f30a706a3073387f30380704fcae013b",
"installed_by": [
"subworkflows"
]
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "1b89f75f1aa2021ec3360d0deccd0f6e97240551",
"installed_by": [
"subworkflows"
]
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "2fd2cd6d0e7b273747f32e465fdc6bcc3ae0814e",
"installed_by": [
"subworkflows"
]
"installed_by": ["subworkflows"]
}
}
}
}
}
}
}
2 changes: 1 addition & 1 deletion subworkflows/local/align.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -126,7 +126,7 @@ workflow ALIGN {
[],
[],
[],
[]
[],
compress
)
ch_msa = ch_msa.mix(CLUSTALO_ALIGN.out.alignment)
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