clean

nf-core · Dec 13, 2024 · 2388c20 · 2388c20
1 parent 221d813
commit 2388c20
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Showing 6 changed files with 3 additions and 136 deletions.
diff --git a/assets/samplesheet.csv b/assets/samplesheet.csv
@@ -1,3 +1,3 @@
 id,fasta,reference,optional_data
 seatoxin-ref,https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/testdata/setoxin-ref.fa,https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/testdata/setoxin.ref,https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/testdata/structures/seatoxin-ref.tar.gz
-toxin-ref,https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/testdata/toxin-ref.fa,https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/testdata/toxin.ref,
+toxin-ref,https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/testdata/toxin-ref.fa,https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/testdata/toxin.ref,
diff --git a/assets/toolsheet.csv b/assets/toolsheet.csv
@@ -1,4 +1,3 @@
 tree,args_tree,aligner,args_aligner
 ,,FOLDMASON,
 FAMSA,,FAMSA,
-FAMSA,,FOLDMASON,
diff --git a/subworkflows/local/compute_trees.nf b/subworkflows/local/compute_trees.nf
@@ -33,7 +33,8 @@ workflow COMPUTE_TREES {
             it -> [it[0], it[2]]
         }.set { ch_optional_data_no_fasta }
 
-    CUSTOM_PDBSTOFASTA(ch_optional_data_no_fasta)    
+    CUSTOM_PDBSTOFASTA(ch_optional_data_no_fasta)
+    ch_versions = ch_versions.mix(CUSTOM_PDBSTOFASTA.out.versions)    
 
     if(!params.skip_preprocessing){
         FASTAVALIDATOR(CUSTOM_PDBSTOFASTA.out.fasta)

diff --git a/test.csv b/test.csv
diff --git a/test_merged.csv b/test_merged.csv
diff --git a/test_merging.groovy b/test_merging.groovy