Skip to content

Fix tests on conda #593

Fix tests on conda

Fix tests on conda #593

Triggered via pull request February 16, 2025 13:07
Status Cancelled
Total duration 12m 18s
Artifacts

ci.yml

on: pull_request
Matrix: Stub run
Matrix: test
Matrix: test_conda
Fit to window
Zoom out
Zoom in

Annotations

29 errors and 6 warnings
Run pipeline with test data (24.04.2 | test_conda | conda)
Process completed with exit code 1.
Run pipeline with test data (latest-everything | test_pdb | conda)
The job was canceled because "_24_04_2_conda_test_conda" failed.
Run pipeline with test data (latest-everything | test_pdb | conda)
The operation was canceled.
Run pipeline with test data (latest-everything | test_conda | conda)
The job was canceled because "_24_04_2_conda_test_conda" failed.
Run pipeline with test data (latest-everything | test_conda | conda)
The operation was canceled.
Run pipeline with test data (latest-everything | test_nosheet | conda)
The job was canceled because "_24_04_2_conda_test_conda" failed.
Run pipeline with test data (latest-everything | test_nosheet | conda)
The operation was canceled.
Run pipeline with test data (24.04.2 | test_pdb | conda)
The job was canceled because "_24_04_2_conda_test_conda" failed.
Run pipeline with test data (24.04.2 | test_pdb | conda)
The operation was canceled.
Stub run (24.04.2, docker, --skip_eval, test, false)
Canceling since a higher priority waiting request for 'nf-core CI-199' exists
Stub run (24.04.2, docker, --skip_eval, test, false)
The operation was canceled.
Stub run (latest-everything, docker, --skip_validation, test, false)
Canceling since a higher priority waiting request for 'nf-core CI-199' exists
Stub run (latest-everything, docker, --skip_validation, test, false)
The operation was canceled.
Stub run (24.04.2, docker, --skip_preprocessing, test, false)
Canceling since a higher priority waiting request for 'nf-core CI-199' exists
Stub run (24.04.2, docker, --skip_preprocessing, test, false)
The operation was canceled.
Stub run (latest-everything, docker, --skip_stats, test, false)
Canceling since a higher priority waiting request for 'nf-core CI-199' exists
Stub run (latest-everything, docker, --skip_stats, test, false)
The operation was canceled.
Run pipeline with test data (latest-everything | test | docker)
Canceling since a higher priority waiting request for 'nf-core CI-199' exists
Run pipeline with test data (latest-everything | test | docker)
The operation was canceled.
Stub run (24.04.2, docker, --skip_compression, test, false)
Canceling since a higher priority waiting request for 'nf-core CI-199' exists
Stub run (24.04.2, docker, --skip_compression, test, false)
The operation was canceled.
Stub run (latest-everything, docker, --skip_compression, test, false)
Canceling since a higher priority waiting request for 'nf-core CI-199' exists
Stub run (latest-everything, docker, --skip_compression, test, false)
The operation was canceled.
Stub run (24.04.2, docker, --skip_visualisation, test, false)
Canceling since a higher priority waiting request for 'nf-core CI-199' exists
Stub run (24.04.2, docker, --skip_visualisation, test, false)
The operation was canceled.
Stub run (24.04.2, docker, --skip_stats, test, false)
Canceling since a higher priority waiting request for 'nf-core CI-199' exists
Stub run (24.04.2, docker, --skip_stats, test, false)
The operation was canceled.
Stub run (24.04.2, docker, --skip_shiny, test, false)
Canceling since a higher priority waiting request for 'nf-core CI-199' exists
Stub run (24.04.2, docker, --skip_shiny, test, false)
The operation was canceled.
Run pipeline with test data (24.04.2 | test_nosheet | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:202: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (24.04.2 | test_conda | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:202: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (latest-everything | test_pdb | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:202: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (latest-everything | test_conda | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:202: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (latest-everything | test_nosheet | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:202: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Run pipeline with test data (24.04.2 | test_pdb | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:202: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(