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Add gpu support and alternative to samplesheet and toolsheet #550

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Add gpu support and alternative to samplesheet and toolsheet

Add gpu support and alternative to samplesheet and toolsheet #550

Run time

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Job Run time
Run pipeline with test data (24.04.2 | test | docker)
2m 53s
Stub run (24.04.2, docker, --skip_stats, test, false)
3m 11s
Run pipeline with test data (24.04.2 | test_pdb | docker)
2m 52s
Stub run (24.04.2, docker, --skip_eval, test, false)
3m 9s
Run pipeline with test data (24.04.2 | test_nosheet | docker)
2m 38s
Stub run (24.04.2, docker, --skip_visualisation, test, false)
3m 9s
Run pipeline with test data (latest-everything | test | docker)
2m 34s
Stub run (24.04.2, docker, --skip_validation, test, false)
2m 52s
Run pipeline with test data (latest-everything | test_pdb | docker)
2m 52s
Stub run (24.04.2, docker, --skip_preprocessing, test, false)
3m 11s
Run pipeline with test data (latest-everything | test_nosheet | docker)
2m 51s
Stub run (24.04.2, docker, --skip_compression, test, false)
3m 9s
Stub run (24.04.2, docker, --skip_shiny, test, false)
3m 9s
Stub run (latest-everything, docker, --skip_stats, test, false)
3m 4s
Stub run (latest-everything, docker, --skip_eval, test, false)
3m 10s
Stub run (latest-everything, docker, --skip_visualisation, test, false)
2m 59s
Stub run (latest-everything, docker, --skip_validation, test, false)
2m 59s
Stub run (latest-everything, docker, --skip_preprocessing, test, false)
3m 10s
Stub run (latest-everything, docker, --skip_compression, test, false)
3m 8s
Stub run (latest-everything, docker, --skip_shiny, test, false)
3m 10s
1h 0m 10s