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WIP: New Module: Pychopper #7438

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merged 8 commits into from
Feb 6, 2025
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PR checklist

Closes #7435

  • [x ] This comment contains a description of changes (with reason).
  • [x ] If you've fixed a bug or added code that should be tested, add tests!
  • [x ] If you've added a new tool - have you followed the module conventions in the contribution docs
  • [NA ] If necessary, include test data in your PR.
  • [x ] Remove all TODO statements.
  • [x -yes except tool does not output a version annoyingly ] Emit the versions.yml file.
  • [x ] Follow the naming conventions.
  • [x ] Follow the parameters requirements.
  • [x ] Follow the input/output options guidelines.
  • [x ] Add a resource label
  • [x ] Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@chriswyatt1 chriswyatt1 changed the title WIP: Pychopper WIP: New Module: Pychopper Feb 5, 2025
@chriswyatt1
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@nf-core-bot fix linting

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@chriswyatt1
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@nf-core-bot fix linting

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@FernandoDuarteF FernandoDuarteF left a comment

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Everything seems OK.

@FernandoDuarteF FernandoDuarteF added this pull request to the merge queue Feb 6, 2025
Merged via the queue into nf-core:master with commit 1436029 Feb 6, 2025
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new module: pychopper
2 participants