update test config paths

nf-core · May 14, 2024 · 0deda22 · 0deda22
1 parent 40cf7e5
commit 0deda22
Show file tree

Hide file tree

Showing 4 changed files with 8 additions and 8 deletions.
diff --git a/conf/test_ionannotator.config b/conf/test_ionannotator.config
@@ -20,8 +20,8 @@ params {
     max_time   = '6.h'
 
     // Input data
-    fasta = 'https://raw.githubusercontent.com/nf-core/test-datasets/mhcquant/testdata/UP000005640_9606.fasta'
-    input = 'https://raw.githubusercontent.com/nf-core/test-datasets/mhcquant/testdata/HepG2_sample_sheet.tsv'
+    input = params.pipelines_testdata_base_path + 'mhcquant/testdata/HepG2_sample_sheet.tsv'
+    fasta = params.pipelines_testdata_base_path + 'mhcquant/testdata/UP000005640_9606.fasta'
 
     // Don't do quantification since this step needs a larger test dataset (-> test quantification using test_full)
     skip_quantification = true

diff --git a/conf/test_mokapot.config b/conf/test_mokapot.config
@@ -20,8 +20,8 @@ params {
     max_time   = '6.h'
 
     // Input data
-    fasta = 'https://raw.githubusercontent.com/nf-core/test-datasets/mhcquant/testdata/UP000005640_9606.fasta'
-    input = 'https://raw.githubusercontent.com/nf-core/test-datasets/mhcquant/testdata/HepG2_sample_sheet.tsv'
+    input = params.pipelines_testdata_base_path + 'mhcquant/testdata/HepG2_sample_sheet.tsv'
+    fasta = params.pipelines_testdata_base_path + 'mhcquant/testdata/UP000005640_9606.fasta'
 
     // Don't do quantification since this step needs a larger test dataset (-> test quantification using test_full)
     skip_quantification = true

diff --git a/conf/test_percolator.config b/conf/test_percolator.config
@@ -20,8 +20,8 @@ params {
     max_time   = '6.h'
 
     // Input data
-    fasta = 'https://raw.githubusercontent.com/nf-core/test-datasets/mhcquant/testdata/UP000005640_9606.fasta'
-    input = 'https://raw.githubusercontent.com/nf-core/test-datasets/mhcquant/testdata/HepG2_sample_sheet.tsv'
+    input = params.pipelines_testdata_base_path + 'mhcquant/testdata/HepG2_sample_sheet.tsv'
+    fasta = params.pipelines_testdata_base_path + 'mhcquant/testdata/UP000005640_9606.fasta'
 
     // Don't do quantification since this step needs a larger test dataset (-> test quantification using test_full)
     skip_quantification = true

diff --git a/conf/test_timstof.config b/conf/test_timstof.config
@@ -20,8 +20,8 @@ params {
     max_time   = '6.h'
 
     // Input data
-    input = '/mnt/volume/dev/mhcquant/samplesheets/samplesheet_timstof_test.tsv'
-    fasta = 'https://raw.githubusercontent.com/nf-core/test-datasets/mhcquant/testdata/UP000005640_9606.fasta'
+    input = params.pipelines_testdata_base_path + 'mhcquant/testdata/sample_sheet_timstof.tsv'
+    fasta = params.pipelines_testdata_base_path + 'mhcquant/testdata/UP000005640_9606.fasta'
 
     // Don't do quantification since this step needs a larger test dataset (-> test quantification using test_full)
     skip_quantification = true