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Important! Template update for nf-core/tools v3.1.1 #738

Merged
merged 8 commits into from
Jan 20, 2025
Merged

Important! Template update for nf-core/tools v3.1.1 #738

merged 8 commits into from
Jan 20, 2025

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mirpedrol
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Version 3.1.1 of nf-core/tools has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline.

Please make sure to merge this pull-request as soon as possible, resolving any merge conflicts in the nf-core-template-merge-3.1.1 branch (or your own fork, if you prefer). Once complete, make a new minor release of your pipeline.

For instructions on how to merge this PR, please see https://nf-co.re/docs/contributing/sync/.

For more information about this release of nf-core/tools, please see the v3.1.1 release page.

@mirpedrol mirpedrol mentioned this pull request Dec 20, 2024
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github-actions bot commented Jan 9, 2025 •
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nf-core pipelines lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 7ac02b0

+| ✅ 327 tests passed       |+
#| ❔   2 tests were ignored |#
!| ❗   5 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in main.nf: Remove this line if you don't need a FASTA file [TODO: try and test using for --host_fasta and --host_genome]
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 3.1.1
  • Run at 2025-01-19 06:31:26

jfy133
jfy133 reviewed Jan 19, 2025
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Switch all references of main back to master

assets/schema_input.json Outdated Show resolved Hide resolved
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@jfy133 jfy133 merged commit 28dfa97 into dev Jan 20, 2025
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@sateeshperi sateeshperi sateeshperi approved these changes

@jfy133 jfy133 jfy133 approved these changes

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@mirpedrol @jfy133 @sateeshperi @nf-core-bot