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Fix linting
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jfy133 committed Jan 9, 2025
1 parent 5556c59 commit 8175f0f
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8 changes: 4 additions & 4 deletions .nf-core.yml
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@@ -1,10 +1,10 @@
lint:
files_unchanged:
- lib/NfcoreTemplate.groovy
- lib/NfcoreTemplate.groovy
nextflow_config:
- config_defaults:
- params.phix_reference
- params.lambda_reference
- config_defaults:
- params.phix_reference
- params.lambda_reference
nf_core_version: 3.1.1
repository_type: pipeline
template:
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1 change: 0 additions & 1 deletion README.md
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<img src="docs/images/mag_workflow.png" alt="nf-core/mag workflow overview" width="90%">
</p>


## Pipeline summary

By default, the pipeline currently performs the following: it supports both short and long reads, quality trims the reads and adapters with [fastp](https://github.com/OpenGene/fastp) and [Porechop](https://github.com/rrwick/Porechop), and performs basic QC with [FastQC](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/), and merge multiple sequencing runs.
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