Added Trimmomatic, support contig for bining, set concoct default parameters #2004
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ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Set up job
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Free some space
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Check out pipeline code
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Install Nextflow
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Clean up Disk space
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Run pipeline with test_virus_identification test profile
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Post Check out pipeline code
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Complete job
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