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Merging template updates up to 3.2 #181

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remove duplicate subworkflow
christopher-mohr committed Jan 30, 2025
commit fb0a9c2a0bf85d180c120a38ab0641140ba7050f
6 changes: 2 additions & 4 deletions workflows/hlatyping.nf
Original file line number Diff line number Diff line change
@@ -16,6 +16,8 @@
//
include { CHECK_PAIRED } from '../modules/local/check_paired'

include { paramsSummaryMultiqc } from '../subworkflows/nf-core/utils_nfcore_pipeline'
include { softwareVersionsToYAML } from '../subworkflows/nf-core/utils_nfcore_pipeline'
include { methodsDescriptionText } from '../subworkflows/local/utils_nfcore_hlatyping_pipeline'

/*
@@ -38,10 +40,6 @@ include { YARA_MAPPER } from '../modules/nf-core/yara/mapper/mai

include { paramsSummaryMap } from 'plugin/nf-schema'

include { paramsSummaryMultiqc } from '../subworkflows/nf-core/utils_nfcore_pipeline'
include { softwareVersionsToYAML } from '../subworkflows/nf-core/utils_nfcore_pipeline'
include { methodsDescriptionText } from '../subworkflows/local/utils_nfcore_hlatyping_pipeline'

/*
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
RUN MAIN WORKFLOW