From bb44dd669180b662dc49f045c43d76657d5012f8 Mon Sep 17 00:00:00 2001
From: SpikyClip <74215773+SpikyClip@users.noreply.github.com>
Date: Sun, 28 Jul 2024 09:38:46 +1000
Subject: [PATCH] Add dedicated optitype output folder.

---
 conf/modules.config | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/conf/modules.config b/conf/modules.config
index a305cc2..1cf54da 100644
--- a/conf/modules.config
+++ b/conf/modules.config
@@ -44,7 +44,7 @@ process {
 
     withName: OPTITYPE {
         publishDir = [
-                path: { "${params.outdir}" },
+                path: { "${params.outdir}/optitype" },
                 mode: params.publish_dir_mode,
                 saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
             ]